Landscape of copy number variations in Bos taurus: individual – and inter-breed variability

BMC Genomics

Table 2 The most common deletions in the whole dataset

BTA	begin	end	genomic location	overlapping with the DGVa
2	136,815,101	136,816,200	intergenic	[25] (1)
2	136,942,201	136,943,800	intergenic	[25] (1)
6	5,358,201	5,360,200	intergenic	[25] (6)
6	5,897,301	5,899,100	intergenic	[25] (10), [23] (1)
6	5,903,601	5,904,300	intergenic	[25] (10), [23] (1)
6	6,218,501	6,219,600	intron of the ENSBTAG00000035764 gene	[25] (7), [23] (1)
6	6,548,401	6,549,400	intergenic	[25] (8)
7	34,622,901	34,623,700	intergenic	[16] (1), [54] (1)
8	39,388,901	39,389,500	intergenic	[25] (1)
8	62,206,601	62,207,700	intergenic
14	292,501	294,900	upstream gene variant of ENSBTAG00000046822 (U6 spliceosomal RNA)	[25] (20)
14	322,901	325,800	upstream gene variant of ENSBTAG00000045988 (5S rRNA)	[25] (24)
14	389,001	391,100	downstream gene variant of ENSBTAG00000045780 (5S rRNA)	[25] (26)
16	7,825,301	7,826,200	intergenic	[25] (2)
17	50,668,301	50,670,100	intergenic	[25] (2)
21	2,020,201	2,022,100	upstream gene variant of ENSBTAG00000046925 (5S rRNA)	[25] (1)
21	2,025,201	2,026,700	intergenic	[25] (1)
X	35,728,601	35,730,000	intergenic
X	53,961,901	53,963,800	intergenic
X	54,097,401	54,098,700	intergenic	[25] (3)

The list of the 20 most common deletions detected in this study. Genomic locations were determined by the VEP program. The last column shows the number of deletions found in other studies available under the DGVa database

ISSN: 1471-2164