Landscape of copy number variations in Bos taurus: individual – and inter-breed variability

BMC Genomics

Table 3 The most common breed specific duplications

breed	# bulls sharing duplication	BTA	begin	end	genomic location	overlapping with the DGVa
BSW	10	5	74,078,801	74,086,100	intergenic
BSW	10	14	64,001	89,100	intergenic	[25] (1), [12] (3), [23] (1)
FLV	6	17	72,899,301	72,924,700	intron of the ENSBTAG00000031160 gene	[25] (1), [12] (3), [23] (1), [54] (1)
GUE	6	5	114,221,601	114,225,800	intergenic
GUE	6	8	56,717,001	56,730,400	intergenic
GUE	6	12	73,428,801	73,437,300	intergenic	[25] (28)
GUE	6	25	19,009,101	19,013,400	intron of the ENSBTAG00000018560 (DNAH3) gene
RED	7	9	88,596,301	88,599,700	intron of the ENSBTAG00000015935 (IYD) gene	[25] (2), [12] (1)
RED	7	X	36,034,701	36,036,900	intergenic	[25] (1)
SIM	5	10	24,513,701	24,528,400	intergenic	[25] (14), [12] (1)

The list of the most common duplications detected within each breed. Genomic locations were determined by the VEP program. The last column shows the number of duplications found in other studies available under the DGVa database

ISSN: 1471-2164