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Table 2 Differentially methylated probes mapping to gene bodies and CpG islands

From: Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

 

ED SOV

TE SOV

TP SOV

ED IVP

TE IVP

TP IVP

Total

4

1452

971

35

289

389

CpG Island

0

18

7

0

3

8

% in CpG Island

0

1.2

0.7

0

1.04

2.1

Gene Body

2

432

309

11

78

136

% in Gene Body

50

29.8

31.8

31.4

27

35

Gene body up

0

393 (91%)

132 (43%)

0

35 (45%)

85 (62.5% )

Gene body down

2 (100%)

39 (9%)

177 (57%)

11 (100%)

43 (55%)

51 (37.5%)

  1. ED = embryonic disc, TP = trophectoderm peripheral, TE = trophectoderm adjacent to embryonic disc, SOV = superovulationderived embryo, IVP = in vitro-derived embryo
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BMC Genomics

ISSN: 1471-2164

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