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Table 2 Differentially methylated probes mapping to gene bodies and CpG islands

From: Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies

  ED SOV TE SOV TP SOV ED IVP TE IVP TP IVP
Total 4 1452 971 35 289 389
CpG Island 0 18 7 0 3 8
% in CpG Island 0 1.2 0.7 0 1.04 2.1
Gene Body 2 432 309 11 78 136
% in Gene Body 50 29.8 31.8 31.4 27 35
Gene body up 0 393 (91%) 132 (43%) 0 35 (45%) 85 (62.5% )
Gene body down 2 (100%) 39 (9%) 177 (57%) 11 (100%) 43 (55%) 51 (37.5%)
  1. ED = embryonic disc, TP = trophectoderm peripheral, TE = trophectoderm adjacent to embryonic disc, SOV = superovulationderived embryo, IVP = in vitro-derived embryo