Table 8 Candidate genes related to secondary metabolism identified in leaf by KEGG Pathway Mapping
Pathway | Enzyme Name | EC Number | Leaf Gene ID | E value | Sequence length |
|---|---|---|---|---|---|
Lignin pathway | PAL:Phenylalanine ammonia-lyase | EC:4.3.1.24 | CDS_25139_Unigene_63439 | 0 | 2142 |
| Â | CCoAOMT: Caffeoyl CoA O-methyltransferase | EC:2.1.1.104 | CDS_8759_Unigene_36297 | 1.02E-121 | 807 |
| Â | COMT: Caffeic acid O-methyltransferase | EC:2.1.1.68 | CDS_32183_Unigene_76237 | 0 | 1092 |
| Â | 4CL: 4-Coumarate:coenzyme A(CoA) ligase | EC:6.2.1.12 | CDS_30808_Unigene_73318 | 0 | 1662 |
| Â | CCR: Cinnamoyl-CoA reductase | EC:1.2.1.44 | CDS_30855_Unigene_73445 | 7.34E-146 | 1017 |
| Â | HCT: Hydroxycinnamoyl transferase | EC:2.3.1.133 | CDS_18828_Unigene_54046 | 6.33E-127 | 777 |
| Â | C4H: Cinnamate-4-hydroxylase | EC:1.14.13.11 | CDS_13347_Unigene_45300 | 0 | 1653 |
| Â | C3H: 4-Coumarate 3-hydroxylase | EC:1.14.13.36 | CDS_6947_Unigene_31430 | 0 | 1593 |
| Â | F5H: Ferulate 5-hydroxylase | EC:1.14.-.- | CDS_13705_Unigene_45900 | 2.09E-167 | 1083 |
| Â | CAD: Cinnamyl alcohol dehydrogenase | EC:1.1.1.195 | CDS_12114_Unigene_43205 | 0 | 1062 |
Saponin pathway | Acetyl-CoA acetyltransferase | EC:2.3.1.9 | CDS_15891_Unigene_49443 | 0 | 1248 |
HMG-CoA synthase | EC:2.3.3.10 | CDS_14177_Unigene_46706 | 0 | 1407 | |
HMG-CoA reductase | EC:1.1.1.34 | CDS_6769_Unigene_31,011 | 0 | 1749 | |
Mevalonate kinase | EC:2.7.1.36 | CDS_25786_Unigene_64544 | 0 | 1167 | |
Phosphomevalonate kinase | EC:2.7.4.2 | CDS_25395_Unigene_63890 | 0 | 1551 | |
Mevalonate-5-diphosphate decarboxylase | EC:4.1.1.33 | CDS_29708_Unigene_71225 | 0 | 1266 | |
Isopentenyl-PP isomerase | EC:5.3.3.2 | CDS_25506_Unigene_64122 | 2.72E-154 | 1161 | |
Farnesyl diphosphate synthase | EC:2.5.1.1 2.5.1.10 | CDS_11635_Unigene_42360 | 0 | 1221 | |
Squalene synthase | EC:2.5.1.21 | CDS_463_Unigene_2687 | 0 | 1230 | |
Squalene epoxidase | EC:1.14.14.17 | CDS_5257_Unigene_26107 | 0 | 1575 | |
Cycloartenol synthase | EC:5.4.99.8 | CDS_11153_Unigene_41455 | 0 | 2457 | |
DOXP(1-deoxy-D-xylulose-5-phosphate)synthase | EC:2.2.1.7 | CDS_22770_Unigene_59944 | 0 | 2223 | |
DOXP(1-deoxy-D-xylulose-5-phosphate) reductoisomerase | EC:1.1.1.267 | CDS_20571_Unigene_56673 | 0 | 1413 | |
Anthroquinone Pathway | Keto reductase | EC:1.1.1.184 | CDS_15459_Unigene_48740 | 0 | 1299 |
Oktaketide synthase | EC:2.3.1.- | CDS_36399_Unigene_84377 | 1.23E-109 | 1212 | |
UDP Glycosyltransferase | EC:2.4.1.- | CDS_1908_Unigene_10,506 | 1.95E-35 | 2112 | |
Carotenoid pathway | phytoene synthase | EC:2.5.1.32 | CDS_7115_Unigene_31975 | 0 | 1197 |
15-cis-phytoene desaturase | EC:1.3.5.5 | CDS_13567_Unigene_45668 | 0 | 1710 | |
zeta-carotene isomerase | EC:5.2.1.12 | CDS_30973_Unigene_73723 | 0 | 1083 | |
prolycopene isomerase | EC:5.2.1.13 | CDS_11458_Unigene_41985 | 0 | 1776 | |
lycopene beta-cyclase | EC:5.5.1.19 | CDS_7694_Unigene_33583 | 0 | 1104 | |
lycopene epsilon-cyclase | EC:5.5.1.18 | CDS_22879_Unigene_60075 | 0 | 1620 | |
zeaxanthin epoxidase | EC:1.14.13.90 | CDS_25413_Unigene_63924 | 0 | 1992 | |
violaxanthin de-epoxidase | EC:1.23.5.1 | CDS_22464_Unigene_59446 | 0 | 1401 | |
abscisic-aldehyde oxidase | EC:1.2.3.14 | CDS_21911_Unigene_58585 | Â | 4152 |