Table 1 Summary statistics of 3’ UTR length of canonical transcripts in the nine teleost genomes
Species | Cichlids | Non-cichlids | |||||||
|---|---|---|---|---|---|---|---|---|---|
M. zebra | P. nyererei | H. burtoni | N.brichardi | O. niloticus | O. latipes | P. formosa | A. mexicanus | D. rerio | |
Genome size (Mb) | 860 | 830 | 831 | 848 | 928 | 870 | 749 | 1191 | 1372 |
Number of transcripts | 23,910 | 22,358 | 23,089 | 21,921 | 25,191 | 21,979 | 24,901 | 22,920 | 25,866 |
Total 3’UTR length (Mb) | 34.18 | 27.73 | 35.85 | 23.99 | 35.80 | 21.40 | 30.79 | 19.16 | 29.96 |
Percentage of 3’ UTR in genome | 3.97 | 3.34 | 4.31 | 2.83 | 3.86 | 2.46 | 4.11 | 1.61 | 2.18 |
Mean length | 1429 | 1240 | 1553 | 1094 | 1421 | 974 | 1237 | 836 | 1158 |
Median length | 993 | 842 | 1087 | 690 | 970 | 669 | 812 | 516 | 691 |
25th percentile | 410 | 317.25 | 463 | 194 | 381 | 277 | 333 | 175 | 270 |
75th percentile | 1980 | 1727 | 2143 | 1552 | 1990.5 | 1334 | 1680 | 1133 | 1540 |
Maximum length | 15,626 | 12,530 | 21,087 | 16,134 | 17,796 | 15,264 | 16,660 | 12,260 | 22,013 |