Table 2 GO terms of biological process classification of DEGs in leaves and roots

LF-specific 1/0d

GO ID

Up

Down

RT-specific 1/0d

GO ID

Up

Down

Organonitrogen compound metabolic

GO:1901564

148

261

Cell wall organization or biogenesis

GO:0071554

229

3

Pigment metabolic process

GO:0042440

27

65

Cell division

GO:0051301

184

5

Chlorophyll metabolic process

GO:0015994

15

35

External encapsulating structure organization

GO:0045229

198

3

Small molecule metabolic process

GO:0044281

214

361

Carbohydrate metabolic process

GO:0005975

365

8

Photosynthesis

GO:0015979

10

84

Cell cycle

GO:0007049

208

5

 Single-organism metabolic process

GO:0044710

456

664

745

39

 Small molecule biosynthetic process

GO:0044283

82

149

158

8

 Carbohydrate biosynthetic process

GO:0016051

49

80

102

1

 Organic hydroxy compound biosynthetic

GO:1901617

23

45

54

3

Lipid metabolic process

GO:0006629

128

177

202

12

LF-specific 3/0d

GO ID

Up

Down

RT-specific 3/0d

GO ID

Up

Down

DNA-templated transcription

GO:0006351

221

128

Jasmonic acid mediated signaling pathway

GO:0009867

19

4

RNA biosynthetic process

GO:0032774

221

128

Cellular response to oxygen-containing compound

GO:1901701

47

14

Heterocycle biosynthetic process

GO:0018130

242

139

Defense response to bacterium

GO:0042742

29

5

Aromatic compound biosynthetic process

GO:0019438

261

142

Cellular response to jasmonic acid stimulus

GO:0071395

19

4

Organic cyclic compound biosynthetic

GO:1901362

267

145

Cellular response to acid chemical

GO:0071229

33

12

 Response to organonitrogen compound

GO:0010243

54

9

34

3

 Response to endogenous stimulus

GO:0009719

194

69

121

29

 Response to oxygen-containing compound

GO:1901700

162

50

106

26

 Defense response

GO:0006952

141

31

69

22

 Response to organic substance

GO:0010033

200

78

126

30