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Table 2 Candidate genes that suppress par-4-dependent hyperplasia during the dauer stage

From: Genome-wide surveys reveal polarity and cytoskeletal regulators mediate LKB1-associated germline stem cell quiescence

Chromo-some

Cosmid identifier

Gene

Brief description

I

H26D21.1a

hus-1

DNA damage checkpoint protein required for DNA damage-induced cell cycle arrest in C. elegans

I

C43E11.6

nab-1

Neurabin orthologue that regulate interactions between actin and microtubules during cell division, migration and growth cone guidance

I

F27C1.7a

atp-3

Subunit of mitochondrial ATP synthase, which regulates growth rate, body size, and ageing.

I

C34G6.6a

noah-1

ECM component required for molting, development, vulval development, and normal body morphology

I

H15N14.1

adr-1

Adenosine deaminase that acts on RNA by deaminating adenosines and generating inosines in dsRNA; protects transgenic RNA from RNAi silencing

I

C54G4.8a

cyc-1

Subunit of complex III cytochrome c reductase required for normal ATP production

I

F26E4.9a

cco-1

Subunit of cytochrome c oxidase-1, a component the electron transport chain in mitochondria

I

E03H4.8a

 

Uncharacterized

I

H28O16.1a

 

Uncharacterized

I

M01D7.1a

 

Uncharacterized

I

ZK1151.1

vab-10

A spectraplakin, component of the hemidesmosome in C. elegans; required for transducing mechanical signals from muscle cells to epidermis, and DTC migration

I

B0414.2

rnt-1

Transcription factor required for seam cell proliferation; interacts with SMA-4 and regulates expression of CDK- inhibitor cki-1

II

T15H9.3a

hlh-6

Helix loop helix transcription factor

II

C47D12.6a

tars-1

Threonyl amino-acyl tRNA synthetase

II

ZK930.3a

vab-23

Transcription factor involved in ventral closure, elongation

II

W08F4.6a

mlt-8

Putative signalling peptide secreted from cells involved in the L2/L3 molting process

II

W03C9.3

rab-7

Rab-GTPase required for endosome to lysosome trafficking

II

F59G1.3a

vps-35

Vacuolar protein sorting factor

II

R09D1.7a

chil-20

Chitinase-like protein

II

C41C4.4a

ire-1

Transmembrane serine/threonine kinase and endoribonuclease necessary for unfolded protein response (UPR)

II

F10B5.1a

rpl-10

Ribosomal subunit L10

III

T05G5.3

cdk-1

Cyclin-dependent kinase required for cell cycle progression through the G2/M checkpoint

III

R01H10.1a

div-1

DNA polymerase subunit required for normal interphase timing and asymmetric distribution of PIE-1 and P granules

III

K12H4.4

 

Uncharacterized

III

C04D8.1

pac-1

Rho-GAP involved in establishing radial asymmetry during C. elegans development by regulating the spatial localization of CDC-42

III

F43C1.2a

mpk-1

Mitogen-activated-protein-kinase

III

F58A4.8

tbg-1

γ-tubulin

III

K08E3.6

cyk-4

Rho-GAP and member of the centralspindlin complex required for cytokinesis; also factor localized to intercellular bridge in the rachis required for gonad structural integrity

III

R10E11.2a

vha-2

V-ATPase subunit involved in protein sorting and receptor mediated endocytosis

III

F26A1.14a

 

Uncharacterized

III

H19M22.2a

let-805

Myotactin; subunit of the hemidesmosome complex

III

F26F4.10

rars-1

Arginyl-tRNA synthetase

III

F02A9.6

glp-1

Notch receptor homologue and required for germline proliferation

III

M88.6

pan-1

Transmembrane protein required for completion of larval molts; expression enriched in the germ line

III

B0336.2

arf-1.2

ADP-ribosylation factor homolog, a GTPase that regulates intracellular trafficking and the actin cytoskeleton

III

T12A2.2a

stt-3

Yeast oligosaccharyltransferase subunit homologue

III

F37C12.4

rpl-36

Large ribosomal subunit L36

III

F58A4.11a

gei-13

Predicted DNA binding protein involved in body shape regulation, cuticle synthesis and locomotion

IV

C46A5.2

del-7

Degenerin-like protein; degenerin family of proteins are sodium ion channels essential for homeostasis and involved in mechanotransduction

IV

F56H11.1a

fbl-1

Fibulin, a component of the extracellular matrix required for DTC migration initiation

IV

F56H9.5a

lin-25

Subunit of the Mediator complex, which functions downstream of LET-60 to regulate differentiation of a number of cell types

IV

F57H12.1

arf-3

ADP-ribosylation factor homolog, a GTPase that regulates intracellular trafficking and the actin cytoskeleton

IV

R13H7.1a

srx-20

Serpentine receptor, class X

V

K06A4.3

gsnl-1

Gelsolin-related protein predicted to function as an actin regulatory protein, capping barbed ends of actin filaments

V

Y49A3A.2a

 

Uncharacterized

V

F33E11.1a

nhr-15

A nuclear hormone receptor

V

E02C12.3a

srx-47

Serpentine receptor, class X

V

F53A9.10a

tnt-2

Troponin, a tropomyosin binding protein

V

C54D1.5a

lam-2

Subunit of laminin required for basement membrane integrity and gonad morphology

  1. The gene identity of each RNAi clone was determined by the database available with the commercially available Ahringer RNAi library. The brief descriptions for each gene locus are derived from WormBase or determined according to their functional homology
  2. aRNA candidates that potentially function germline non-autonomously