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Table 3 All exonic variants detected in the rat exome-seq samples

From: Whole exome sequencing in the rat

Sample Total Number of SNPs (%) Annotated SNPs (%) (based on dbSNP) Non-annotated SNPs (%) (based on dbSNP)
C6 30,529 15,945 (52.2%) 14,584 (47.8%)
FAT7 24,167 13,818 (57.2%) 10,349 (42.8%)
DSL-6A/C1 22,060 12,719 (57.7%) 9341 (42.3%)
NBTII 37,984 18,121 (47.7% 19,863 (52.3%)
FF 22,685 14,240 (62.7%) 8445 (37.2%)
FFPE 15,944 10,193 (63.9%) 5751 (36.1%)
  1. Variant detection at 50X depth of coverage and alternate allele depth of 20x