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Table 4 Cell line specific exonic variants detected in the rat exome-seq samples

From: Whole exome sequencing in the rat

Sample

Total Number of Variants

(SNPs + INDELS)

Annotated Variants (%)

(based on dbSNP)

Non-annotated Variants (%)

(based on dbSNP)

C6

5387

1523 (28.3%)

3864 (71.7%)

FAT7

3551

1211 (34.1%)

2340 (65.9%)

DSL-6A/C1

3277

1069 (32.6%)

2208 (67.4%)

NBTII

10,123

2430 (24.0%)

7693 (76.0%)

  1. Variant detection at 50X depth of coverage and alternate allele depth of 20×