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Table 4 Cell line specific exonic variants detected in the rat exome-seq samples

From: Whole exome sequencing in the rat

Sample Total Number of Variants (SNPs + INDELS) Annotated Variants (%) (based on dbSNP) Non-annotated Variants (%) (based on dbSNP)
C6 5387 1523 (28.3%) 3864 (71.7%)
FAT7 3551 1211 (34.1%) 2340 (65.9%)
DSL-6A/C1 3277 1069 (32.6%) 2208 (67.4%)
NBTII 10,123 2430 (24.0%) 7693 (76.0%)
  1. Variant detection at 50X depth of coverage and alternate allele depth of 20×