Table 2 Validation of selected variants in ROH regions
From: Genome data uncover four synergistic key regulators for extremely small body size in horses
| Â | Minor allele frequency | ||||||||
|---|---|---|---|---|---|---|---|---|---|
n | ECA1 105,258,161 | ECA9 36,855,980 | ECA11 15,475,283 | ECA11 15,520,392 | ECA11 15,849,785 | ECA19 28,594,461 | ECA28 7,301,507 | ECA28 7,329,353 | |
Minor allele | Â | A | A | A | T | G | A | T | G |
Breed/ population | |||||||||
American Miniature Horse | 5 | 0.10 | 0.00 | 0.00 | 0.70 | 0.00 | 0.40 | 0.00 | 0.30 |
Arabian Thoroughbred | 8 | 0.00 | 0.00 | 0.00 | 0.0 | 0.00 | 0.00 | 0.00 | 0.00 |
German Classic Pony | 23 | 0.17 | 0.04 | 0.00 | 0.09 | 0.00 | 0.20 | 0.09 | 0.13 |
Connemara pony | 4 | 0.00 | 0.25 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.13 |
Criollo horse | 3 | 0.00 | 0.50 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.00 |
Duelmen horse | 8 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Donkey | 4 | 0.00 | 0.50 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Fell pony | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Friesian horse | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
German Riding Pony | 9 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Hackney pony | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Haflinger | 9 | 0.00 | 0.17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.44 |
Hanoverian | 25 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 |
Holsteiner | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Icelandic horse | 9 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.22 |
Austrian Coldblood | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 |
Lewitzer pony | 7 | 0.00 | 0.14 | 0.00 | 0.00 | 0.00 | 0.14 | 0.00 | 0.00 |
Lusitano | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Miniature Shetland pony | 44 | 0.86 | 0.23 | 0.00 | 0.46 | 0.00 | 0.99 | 0.18 | 0.34 |
New Forest pony | 1 | 0.00 | 0.50 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 |
Noriker | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 |
Norwegian Fjord Horse | 5 | 0.00 | 0.20 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 |
Oldenburger | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Peruvian Paso | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Przewalski | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Rhenish German Coldblood | 9 | 0.00 | 0.33 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 |
Schleswig Coldblood | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Black Forest Horse | 5 | 0.00 | 0.20 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 |
Swedish Warmblood | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Shetland pony | 15 | 0.70 | 0.03 | 0.00 | 0.40 | 0.00 | 0.50 | 0.43 | 0.20 |
Shetland pony-intermixes | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.13 | 0.00 |
Shire Horse | 1 | 0.00 | 0.50 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Sorraia | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Standardbred | 8 | 0.00 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Trakehner | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Welsh Cob (Section D) | 12 | 0.00 | 0.04 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.04 |
Welsh Mountain Pony (Section A) | 5 | 0.00 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.00 |