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Table 3 SNPs suggested to be associated with beak deformity

From: Single SNP- and pathway-based genome-wide association studies for beak deformity in chickens using high-density 600K SNP arrays

SNP ID

Chromosome

Physical position (bp)

Nearbya genes

P-value

rs316010119

6

4,029,716

RET, MBL2, RASGEF1A

1.25E-05

rs317906090

5

18,672,451

LDLRAD3, COMMD9, SLC1A2, RAG1

1.49E-05

rs313002111

1

161,794,494

OLFM4, DIAPH3, TDRD3

3.42E-05

rs313486014

23

2,844,607

PTPRU, STMN1

3.61E-05

rs16327528

3

95,937,095

YWHAQ, TAF1B

3.87E-05

rs317725514

6

4,455,292

BMS1, RET

4.16E-05

rs14944750

10

5,358,795

MIR204–2, APBA2, ADAL

4.42E-05

  1. aGenes located within 5 Mb upstream or downstream of the suggestively associated SNPs