Skip to main content

Table 2 The significantly enriched KEGG pathways (with P < 0.05) based on the differentially expressed mRNAs

From: Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Pathway Id pathway description S gene number TS gene number B gene number TB gene number P value
ko00190 Oxidative phosphorylation 34 579 88 3735 0.00
ko00280 Valine, leucine and isoleucine degradation 19 579 42 3735 0.00
ko01200 Carbon metabolism 30 579 88 3735 0.00
ko03030 DNA replication 13 579 27 3735 0.00
ko00640 Propanoate metabolism 13 579 28 3735 0.00
ko03320 PPAR signaling pathway 19 579 51 3735 0.00
ko00630 Glyoxylate and dicarboxylate metabolism 12 579 26 3735 0.00
ko01230 Biosynthesis of amino acids 19 579 53 3735 0.00
ko00620 Pyruvate metabolism 13 579 31 3735 0.00
ko00071 Fatty acid degradation 12 579 29 3735 0.00
ko04216 Ferroptosis 12 579 30 3735 0.00
ko00260 Glycine, serine and threonine metabolism 12 579 33 3735 0.00
ko00020 Citrate cycle (TCA cycle) 10 579 25 3735 0.00
ko01212 Fatty acid metabolism 13 579 39 3735 0.00
ko00650 Butanoate metabolism 9 579 23 3735 0.01
ko00380 Tryptophan metabolism 11 579 34 3735 0.01
ko00072 Synthesis and degradation of ketone bodies 5 579 10 3735 0.01
ko00310 Lysine degradation 12 579 39 3735 0.01
ko04110 Cell cycle 24 579 99 3735 0.01
ko00240 Pyrimidine metabolism 20 579 79 3735 0.02
ko04146 Peroxisome 17 579 65 3735 0.02
ko03430 Mismatch repair 7 579 19 3735 0.02
ko04914 Progesterone-mediated oocyte maturation 17 579 67 3735 0.02
ko04145 Phagosome 25 579 109 3735 0.02
ko00220 Arginine biosynthesis 6 579 16 3735 0.03
ko01210 2-Oxocarboxylic acid metabolism 5 579 12 3735 0.03
ko00480 Glutathione metabolism 10 579 34 3735 0.03
ko00330 Arginine and proline metabolism 10 579 34 3735 0.03
ko04217 Necroptosis 22 579 95 3735 0.03
ko03440 Homologous recombination 10 579 36 3735 0.04
ko00983 Drug metabolism - other enzymes 7 579 22 3735 0.04
ko00980 Metabolism of xenobiotics by cytochrome P450 8 579 27 3735 0.05
ko00900 Terpenoid backbone biosynthesis 6 579 18 3735 0.05
ko00010 Glycolysis / Gluconeogenesis 11 579 42 3735 0.05
  1. S gene number: the number of significant differentially expressed mRNAs which match to a KEGG term; TS gene number: the number of significant differentially expressed mRNAs which have KEGG annotations; B gene number: the number of detected mRNAs which match to a KEGG term; TB gene number: the number of all detected mRNAs which have KEGG annotations