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Table 2 The significantly enriched KEGG pathways (with P < 0.05) based on the differentially expressed mRNAs

From: Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Pathway Id

pathway description

S gene number

TS gene number

B gene number

TB gene number

P value

ko00190

Oxidative phosphorylation

34

579

88

3735

0.00

ko00280

Valine, leucine and isoleucine degradation

19

579

42

3735

0.00

ko01200

Carbon metabolism

30

579

88

3735

0.00

ko03030

DNA replication

13

579

27

3735

0.00

ko00640

Propanoate metabolism

13

579

28

3735

0.00

ko03320

PPAR signaling pathway

19

579

51

3735

0.00

ko00630

Glyoxylate and dicarboxylate metabolism

12

579

26

3735

0.00

ko01230

Biosynthesis of amino acids

19

579

53

3735

0.00

ko00620

Pyruvate metabolism

13

579

31

3735

0.00

ko00071

Fatty acid degradation

12

579

29

3735

0.00

ko04216

Ferroptosis

12

579

30

3735

0.00

ko00260

Glycine, serine and threonine metabolism

12

579

33

3735

0.00

ko00020

Citrate cycle (TCA cycle)

10

579

25

3735

0.00

ko01212

Fatty acid metabolism

13

579

39

3735

0.00

ko00650

Butanoate metabolism

9

579

23

3735

0.01

ko00380

Tryptophan metabolism

11

579

34

3735

0.01

ko00072

Synthesis and degradation of ketone bodies

5

579

10

3735

0.01

ko00310

Lysine degradation

12

579

39

3735

0.01

ko04110

Cell cycle

24

579

99

3735

0.01

ko00240

Pyrimidine metabolism

20

579

79

3735

0.02

ko04146

Peroxisome

17

579

65

3735

0.02

ko03430

Mismatch repair

7

579

19

3735

0.02

ko04914

Progesterone-mediated oocyte maturation

17

579

67

3735

0.02

ko04145

Phagosome

25

579

109

3735

0.02

ko00220

Arginine biosynthesis

6

579

16

3735

0.03

ko01210

2-Oxocarboxylic acid metabolism

5

579

12

3735

0.03

ko00480

Glutathione metabolism

10

579

34

3735

0.03

ko00330

Arginine and proline metabolism

10

579

34

3735

0.03

ko04217

Necroptosis

22

579

95

3735

0.03

ko03440

Homologous recombination

10

579

36

3735

0.04

ko00983

Drug metabolism - other enzymes

7

579

22

3735

0.04

ko00980

Metabolism of xenobiotics by cytochrome P450

8

579

27

3735

0.05

ko00900

Terpenoid backbone biosynthesis

6

579

18

3735

0.05

ko00010

Glycolysis / Gluconeogenesis

11

579

42

3735

0.05

  1. S gene number: the number of significant differentially expressed mRNAs which match to a KEGG term; TS gene number: the number of significant differentially expressed mRNAs which have KEGG annotations; B gene number: the number of detected mRNAs which match to a KEGG term; TB gene number: the number of all detected mRNAs which have KEGG annotations
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BMC Genomics

ISSN: 1471-2164

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