Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis

Table 1 Thraustochytrids genome statistics

Characteristic	Mn4^a	SW8^a	Schizochytrium sp. CCTCC M209059^a	A. limacinum ATCC MYA-1381^a	A. kerguelense PBS07	S. aggregatum ATCC 28209
Gene ID prefix	Mn4	SW8	SchiM	Aurli1	Aplke1	Schag1
scaffolds	1611	1202	322	181	207	283
assembled genome (Mb)	65.69	61.67	37.28	58.10	34.12	38.96
rate of N	0%	0%	2%	2%	4%	5%
rate of GC	45%	45%	57%	45%	41%	63%
scaffold N50 (kp)	154	128	596	2464	718	635
scaffold N90 (bp)	14,564	22,659	144,465	790,046	313,860	162,527
sequences> = 1 kb	1611	1202	322	181	207	283
sequences> = 2 kb	1583	1189	247	181	130	163
sequences> = 3 kb	1509	1149	218	89	126	156
No. of predicted CDS	17,887	16,574	12,407	14,859	11,892	10,612
No. of secreted proteins	297	252	330	324	316	297

ISSN: 1471-2164