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Table 1 Thraustochytrids genome statistics

From: Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis

Characteristic Mn4a SW8a Schizochytrium sp. CCTCC M209059a A. limacinum ATCC MYA-1381a A. kerguelense PBS07 S. aggregatum ATCC 28209
Gene ID prefix Mn4 SW8 SchiM Aurli1 Aplke1 Schag1
scaffolds 1611 1202 322 181 207 283
assembled genome (Mb) 65.69 61.67 37.28 58.10 34.12 38.96
rate of N 0% 0% 2% 2% 4% 5%
rate of GC 45% 45% 57% 45% 41% 63%
scaffold N50 (kp) 154 128 596 2464 718 635
scaffold N90 (bp) 14,564 22,659 144,465 790,046 313,860 162,527
sequences> = 1 kb 1611 1202 322 181 207 283
sequences> = 2 kb 1583 1189 247 181 130 163
sequences> = 3 kb 1509 1149 218 89 126 156
No. of predicted CDS 17,887 16,574 12,407 14,859 11,892 10,612
No. of secreted proteins 297 252 330 324 316 297
  1. aThe DHA-producing thraustochytrids strains