Adaptive selection of founder segments and epistatic control of plant height in the MAGIC winter wheat population WM-800

Table 3 List of 14 QTL controlling plant height in wheat population WM-800 (detection rate ≥ 35)

QTL name^a	SNP marker^b	Chr^c	Pos^d	Range^e	DR^f	P_Bon-Holm^g	Effect^h	R²valⁱ (%)	Candidate gene^j	Literature^j
QHEI.WM-800.1B	CAP8_c5043_190	1B	117.8	117.8	39	6.70E-05	3.8	0.8
QHEI.WM-800.1D	BS00063511_51	1D	167.1	167.1	44	9.24E-05	−3.9	1.4		[16]
QHEI.WM-800.2A	Excalibur_c20439_825	2A	148.8	148.8	42	6.69E-05	− 2.4	1.0
QHEI.WM-800.2D	Excalibur_rep_c67599_2154	2D	97.1	97.1	35	9.37E-06	−3.5	1.3	Ppd-D1	[89]
QHEI.WM-800.3A	IAAV5729	3A	61.1	61.1	41	5.01E-05	−2.9	1.3		[26]
QHEI.WM-800.4A.a	wsnp_Ex_c5487_9686018	4A	43.2	43.2	42	7.25E-05	2.8	0.8
QHEI.WM-800.4A.b	Kukri_c48199_102	4A	49.0	49.0	36	4.76E-05	− 2.8	1.0
QHEI.WM-800.4A.c	wsnp_Ex_c12725_2021270	4A	147.2	147.2	35	4.69E-05	−4.5	0.5
QHEI.WM-800.4B.a	TG0010a	4B	56.0	56.0	100	1.25E-47	12.8	6.7	Rht-B1	[74]
QHEI.WM-800.4B.b	BS00030843_51	4B	62.9	62.9	35	3.97E-05	−2.8	0.6
QHEI.WM-800.4D	TG0011a	4D	69.2	69.2	99	4.17E-20	−14.9	21.5	Rht-D1	[74]
QHEI.WM-800.5A	RAC875_c30711_544	5A	67.0	67.0	100	1.38E-07	5.3	5.5
QHEI.WM-800.6A	tplb0047k12_1370	6A	79.1	79.1 (2)	47	1.44E-16	5.1	4.8	Rht24	[76]
QHEI.WM-800.7B	RAC875_c76528_296	7B	155.4	155.4–159.7 (2)	51	2.45E-05	−4.3	0.8
								59.9

^aQTL name including trait, population and chromosome information
^bSNP marker name [36]
^cChromosome of SNP marker [36]
^dGenetic position of SNP marker [36]
^eRange of QTL in cM including number of significant SNPs (in brackets) within the range
^fDetection rate (DR) of SNP by cross validation
^gBonferroni corrected p-value of SNP marker
^hEffect of homozygous Julius allele (in cm) compared to non-Julius allele
ⁱCross-validated proportion of explained genetic variance of validation set
^jCandidate genes with references

ISSN: 1471-2164