Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes

BMC Genomics

Table 1 Number of RNA families detected in each genome region and each strain, and total annotations with transcriptional signals

Strain^a	Accession^b	E	S	Tnc	Cluster^c	MLST^d	Source^e
GD201008–001	CP003810	0	36	61	cluster2	7	Fish
GBS6	CP007572	6	54	85	cluster2	22	Mammal/clinical
GBS2-NM	CP007571	3	46	74	cluster2	22	Mammal/clinical
GBS1-NY	CP007570	10	54	89	cluster2	22	Mammal/clinical
HN016	CP011325	0	36	61	cluster2	10	Fish
YM001	CP011326	2	34	61	cluster2	10	Fish
GX064	CP011327	3	29	57	cluster2	10	Fish
2603 V/R	AE009948	0	10	35	cluster1	110	Mammal/clinical
A909	CP000114	1	7	33	cluster1	7	Mammal/clinical
NEM316	AL732656	2	5	32	cluster1	23	Mammal/clinical
09mas018883	HF952104	1	6	32	cluster1	1	Mammal/cattle
ILRI112	HF952106	4	3	32	cluster1	617	Mammal/camels
ILRI005	HF952105	3	3	31	cluster1	609	Mammal/camels
COH1	HG939456	0	13	38	cluster1	110	Mammal/clinical
NGBS061	CP007631	1	8	34	cluster1	459	Mammal/clinical
NGBS572	CP007632	0	13	38	cluster1	452	Mammal/clinical
CNCTC_10/84	CP006910	2	2	29	cluster1	26	Mammal/clinical
SS1	CP010867	0	6	31	cluster1	1	Mammal/clinical
H002	CP011329	0	7	32	cluster1	736	Mammal/clinical
GBS85147	CP010319	3	4	32	cluster1	103	Mammal/clinical
SG-M1	CP012419	1	4	30	cluster1	283	Mammal/clinical
GBS_ST-1	CP013202	0	8	33	cluster1	1	Mammal/canine
SA20–06	CP003919	0	2	27	cluster0	553	Fish
138P	CP007482	0	2	27	cluster0	261	Fish
138spar	CP007565	0	2	27	cluster0	261	Fish
2–22	FO393392	0	2	27	cluster0	261	Fish
GX026	CP011328	0	2	27	cluster0	261	Fish

E: Total RNA families detected in Exclusive Regions; S: Total RNA families detected in Shared regions; Tnc: Total RNA families detected in specific strain
^aName of strain deposited in the NCBI database
^bNCBI accession number
^cGrouping according to cluster analysis performed in Weka
^dMultilocus sequence typing information for each strain
^eStrain source

ISSN: 1471-2164