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Table 2 miRNAs in response to Al stress

From: Identification of microRNAs in response to aluminum stress in the roots of Tibetan wild barley and cultivated barley

miRNA name

GPa

XZ29b

Transcript

Annotation

Degradome detectionc

ata-miR156a-3p

0.20

0.89

HORVU3Hr1G072810.1

Gibberellin 2-oxidase

Y

ata-miR156a-5p

−0.49

0.91

HORVU3Hr1G094730.2

Squamosa promoter-binding-like protein 2

Y

HORVU6Hr1G019700.2

Squamosa promoter-binding-like protein 3

Y

bdi-miR156h-3p

0.33

−1.15

HORVU4Hr1G025850.7

Structure-specific endonuclease subunit slx1

N

HORVU4Hr1G012480.3

Leucine-rich receptor-like protein kinase family protein

N

hvu-miR159a

−0.21

−0.67

HORVU3Hr1G079490.4

MYB domain protein 33

Y

hvu-MIR159a-5p

−0.44

−1.36

HORVU1Hr1G088510.1

Mitogen-activated protein kinase 16

N

osa-miR319a-3p.2-3p

−0.35

0.76

HORVU5Hr1G103400.1

TCP family transcription factor 4

Y

HORVU2Hr1G060120.1

TCP family transcription factor 4

Y

ata-miR160a-5p

−0.44

−0.77

HORVU2Hr1G089670.2

Auxin response factor 10

Y

HORVU7Hr1G101270.6

Auxin response factor 16

Y

HORVU6Hr1G026750.1

Auxin response factor 18

Y

HORVU1Hr1G041770.6

Auxin response factor 22

Y

ata-miR164c-3p

0.37

0.63

HORVU6Hr1G088160.5

Quinone oxidoreductase

Y

hvu-miR166a

−0.82

−1.61

HORVU5Hr1G010650.1

Homeobox-leucine zipper protein family

Y

HORVU5Hr1G061410.29

Homeobox-leucine zipper protein HOX10

Y

HORVU0Hr1G010250.3

Homeobox-leucine zipper protein HOX32

Y

HORVU1Hr1G041790.2

Homeobox-leucine zipper protein family

Y

ata-miR166a-3p

−0.54

−1.84

HORVU0Hr1G010250.3

Homeobox-leucine zipper protein HOX32

N

ata-miR166a-5p

−0.71

−0.03

HORVU5Hr1G056820.4

Histidine protein methyltransferase 1 homolog

N

ata-miR166d-5p

−0.53

−0.29

HORVU4Hr1G018020.2

F-box/WD-40 repeat-containing protein

N

ata-miR167a-5p

−0.63

−0.17

HORVU2Hr1G121110.32

Auxin response factor 6

Y

ata-miR167b-3p

−0.92

−0.71

HORVU1Hr1G075520.2

Jacalin-related lectin 3

N

ata-miR167b-5p

0.58

−0.23

HORVU2Hr1G059280.1

SWI/SNF complex subunit SWI3C

N

tae-miR167c-5p

0.64

−2.00

HORVU1Hr1G077630.2

Ubiquitin carboxyl-terminal hydrolase 25

N

HORVU2Hr1G059280.1

SWI/SNF complex subunit SWI3C

N

ata-miR167f-3p

0.29

0.84

HORVU4Hr1G016990.3

Cysteine desulfurase

N

hvu-miR168-3p

−0.71

1.04

HORVU5Hr1G037570.4

Receptor-like protein kinase

N

hvu-miR168-5p

−0.55

−0.83

HORVU1Hr1G055570.4

WD repeat-containing protein WRAP73

Y

ata-miR169i-5p

0.42

−1.58

HORVU5Hr1G092700.17

Nuclear transcription factor Y subunit A-10

Y

HORVU4Hr1G075830.4

Nuclear transcription factor Y subunit A-3

Y

HORVU6Hr1G081080.12

Nuclear transcription factor Y subunit A-5

Y

ata-miR169d-5p

−0.46

−0.86

HORVU5Hr1G092700.17

Nuclear transcription factor Y subunit A-10

Y

HORVU4Hr1G075830.4

Nuclear transcription factor Y subunit A-3

Y

HORVU6Hr1G081080.12

Nuclear transcription factor Y subunit A-5

Y

ata-MIR169d-3p

−0.91

−1.82

HORVU5Hr1G089950.4

Chromodomain-helicase-DNA-binding protein Mi-2 homolog

N

ata-miR169h-3p

−0.81

0.18

HORVU1Hr1G075540.3

Mitochondrial processing peptidase alpha subunit

Y

ata-miR171b-5p

−0.70

0.14

HORVU5Hr1G081160.4

U-box domain-containing protein 73

N

ata-miR171a-5p

−1.42

−1.15

HORVU2Hr1G076620.7

T-complex protein 11

Y

ata-miR172b-3p

−0.63

−0.55

HORVU5Hr1G112440.1

Ethylene-responsive transcription factor 10

Y

HORVU1Hr1G011800.24

AP2-like ethylene-responsive transcription factor

Y

ata-miR390-5p

−1.86

−0.56

HORVU7Hr1G007520.1

Leucine-rich repeat receptor-like protein kinase family protein

N

ata-miR393-5p

−0.16

−1.57

HORVU2Hr1G070800.3

HvAFB

Y

HORVU1Hr1G021550.4

HvTIR1

Y

ata-miR394-5p

−1.18

−0.30

HORVU1Hr1G043940.3

Protein TIC110, chloroplastic

N

HORVU6Hr1G018370.1

Calnexin 1

N

ata-miR396a-5p

0.16

−1.20

HORVU7Hr1G008680.14

Growth-regulating factor 5

Y

HORVU4Hr1G010080.6

Growth-regulating factor 6

Y

HORVU4Hr1G003440.12

Growth-regulating factor 9

Y

ata-miR396e-5p

0.51

−1.46

HORVU7Hr1G008680.14

Growth-regulating factor 5

Y

HORVU4Hr1G010080.6

Growth-regulating factor 6

Y

HORVU4Hr1G003440.12

Growth-regulating factor 9

Y

osa-miR444a-3p.2

−0.14

−0.82

HORVU2Hr1G080490.1

MADS-box transcription factor 27

Y

ppt-miR477h

1.34

2.83

HORVU1Hr1G050450.2

Replication factor C subunit 5

N

osa-miR827

−0.46

−1.26

HORVU6Hr1G065710.13

SPX domain-containing membrane protein

N

ata-miR1432-5p

−1.56

0.21

HORVU1Hr1G094160.1

Calmodulin like 43

Y

HORVU5Hr1G111520.1

EF hand calcium-binding protein family

Y

hvu-miR5048a

0.36

−1.68

HORVU7Hr1G065130.1

Receptor kinase 2

Y

HORVU7Hr1G043150.1

Protein kinase superfamily protein

Y

tae-miR7757-5p

0.66

−0.55

HORVU5Hr1G086040.7

NBS-LRR disease resistance protein, putative

Y

tae-MIR9662a-5p

−0.38

2.33

HORVU5Hr1G123930.2

Beta-fructofuranosidase, insoluble isoenzyme 3

N

ata-MIR9863a-5p

0.58

1.39

HORVU5Hr1G007750.22

FAR1-related sequence 3

N

HORVU1Hr1G004650.4

Purple acid phosphatase 22

N

ppt-miR894

−0.02

2.08

HORVU7Hr1G041460.1

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Y

hvu-miR5051

0.04

−0.92

HORVU7Hr1G054660.6

Chromosome 3B, genomic scaffold, cultivar Chinese Spring

N

HORVU4Hr1G083260.5

DnaJ homolog subfamily B member 4

N

bdi-miR5054

−1.98

2.07

HORVU4Hr1G003990.3

RNA-binding protein 1

Y

HORVU6Hr1G088580.4

Zinc finger (C3HC4-type RING finger) family protein

Y

osa-miR5072

−1.21

1.43

HORVU3Hr1G075970.2

Pectate lyase family protein

N

gma-miR6300

0.86

3.08

HORVU4Hr1G052010.2

WRKY DNA-binding protein 46

Y

HORVU0Hr1G035440.1

Non-specific phospholipase C4

Y

ptc-miR6478

1.04

3.46

HORVU7Hr1G076700.1

Myosin-J heavy chain

N

ath-miR8175

−2.46

1.96

HORVU5Hr1G085710.3

Aquaporin-like superfamily protein, HvNIP1;2

N

PC-miR1

0.00

−0.73

HORVU4Hr1G042240.2

Hexosyltransferase

N

PC-miR2

0.00

1.26

HORVU1Hr1G074900.1

BZIP transcription factor

N

PC-miR4

2.11

0.00

HORVU6Hr1G035300.19

U11/U12 small nuclear ribonucleoprotein 25 kDa protein

N

PC-miR6

−0.69

0.70

HORVU6Hr1G076340.1

Glycosyltransferase family 61 protein

N

  1. aGP and bXZ29 represent the fold change between Al treatment and control normalized reads in Golden Promise and XZ29, respectively. It was calculated as the formula: fold change = log2 (Al reads / control reads). miRNAs were significantly up-regulated with fold change≥0.5, down-regulated with fold change ≤ − 0.5, unchanged with |fold change| < 0.5. cDegradome detection shows the target genes of miRNAs. Y and N indicate target gene in or not in the degradome sequencing library
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BMC Genomics

ISSN: 1471-2164

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