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Table 4 Statistical summary for runs of homozygosity in sub-populations of three chicken breeds

From: Genomic diversity dynamics in conserved chicken populations are revealed by genome-wide SNPs

  9 sub-populations
BEC07 BEC10 BEC15 BYC07 BYC10 BYC15 LSC10 LSC12 LSC15
NSEG Mean 283.3 276.9 359.93 434.93 365.03 535.2 302.73 286.2 336.37
SD 29.79 37.14 76.71 68.13 41.16 74.15 47.20 38.37 51.53
Min 198 203 233 262 285 362 245 208 238
Max 331 374 528 555 459 710 441 385 426
KB Mean 52,140.53 50,711.57 66,627.02 81,603.17 67,418.29 101,698.6 55,047.78 52,951.72 60,852.49
SD 5327.89 6584.63 13,848.81 12,991.6 6958.4 14,048.53 8217.47 6859.34 9254.44
Min 37,171.4 39,317.8 41,702.3 54,620.9 53,692.6 68,533.3 44,327.9 37,776.7 44,822.8
Max 60,167.8 66,008.9 95,603.7 106,793 81,961.5 132,443 76,486.6 69,474.1 81,567.4
KBAVER Mean 184.18 183.38 185.28 187.74 185 190.09 182.13 185.25 181.11
SD 5.69 6.96 6.34 6.41 7.22 5.27 8.16 6.86 6.02
Min 170.96 168.3 173.63 176.13 171.58 180.77 168.16 173.05 171.62
Max 193.67 199.3 195.99 208.48 196.58 199.42 203.06 200.85 191.57
NSNP Mean 87.92 88.78 91.13 93.25 89.96 96.28 87.76 86.45 88.98
SD 32.75 33.13 34.27 37.12 34.76 38.44 32.35 31.1 32.6
Min 50 50 50 50 50 50 50 50 50
Max 368 339 332 383 370 419 392 310 343
Density Mean 2.28 2.23 2.24 2.2 2.24 2.18 2.25 2.31 2.21
SD 1.87 1.76 1.91 1.67 1.82 1.75 1.7 1.76 1.65
Min 0.53 0.55 0.57 0.55 0.54 0.58 0.59 0.63 0.55
Max 27.84 27.84 28.3 23.57 35.56 33.83 22.77 19.37 35.71
PHOM Mean 0.99 0.99 0.99 0.995 0.99 0.995 0.99 0.99 0.99
SD 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
  1. NSEG average number of segments for the individual declared homozygous
  2. KB average of total number of kb contained within homozygous segments
  3. KBAVER average size of homozygous segments
  4. NSNP average number of SNPs in run
  5. Density max inverse density (kb/SNP)
  6. PHOM Proportion of sites homozygous
  7. Min Minimum
  8. Max Maximum
  9. SD Standard deviation