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Table 1 Multilocus sequence typing (MLST) of 164 CMY-2-producing Escherichia coli from different sources, 2008-2013, Germany

From: Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

MLST E. coli

human patients

MLST E. coli from food

MLST E. coli from livestock animals

  

chicken

turkey

pork

chicken

turkey

pig

cattle

ST

n

ST

n

ST

n

ST

n

ST

n

ST

n

ST

n

ST

n

ST131

6 (13.0%)

ST38

9

ST10

1

ST10

2

ST117

6

ST1196

3

ST1196

3

ST88

1

ST10

4

ST58

5

ST5763

1

ST75

1

ST38

6

  

ST212

1

ST38

1

ST69

3

ST57

5

ST2040

1

  

ST131

5 (12.2%)

  

ST10

1

  

ST38

3

ST117

5

ST117

1

  

ST3778

4

  

ST3778

1

  

ST354

2

ST69

4

ST6008

1

  

ST429

3

  

ST57

1

  

ST58

2

ST429

3

ST421

1

  

ST57

3

  

ST1594

1

  

ST453

2

ST2040

3

ST1463

1

  

ST2040

3

  

ST2040

1

  

ST1844

1

ST68

2

    

ST420

1

      

ST59

1

ST131

2 (3.8%)

    

ST1158

1

      

ST141

1

ST155

2

    

ST540

1

      

ST744

1

ST569

1

    

ST1196

1

      

ST224

1

ST1286

1

    

ST155

1

      

ST4759

1

ST420

1

    

ST2309

1

      

ST23

1

ST10

1

    

ST162

1

      

ST117

1

ST4937

1

    

ST2458

1

      

ST2450

1

ST1818

1

    

ST354

1

      

ST448

1

ST115

1

    

ST10

1

      

ST348

1

ST1594

1

    

ST212

1

      

ST457

1

ST373

1

            

ST86

1

ST108

1

            

ST1463

1

ST752

1

            

ST93

1

ST350

1

            

ST648

1

ST354

1

            

ST127

1

              

ST694

1

              

ST115

1

              

ST2077

1

              

ST393

1

              

ST963

1

              

ST355

1

              

ST362

1

              

Total

46

 

53

 

7

 

3

 

41

 

3

 

9

 

2

  1. Proportion of the most frequent sequence type ST131 in the respective source is given in %