Genomic regions underlying uniformity of yearling weight in Nellore cattle evaluated under different response variables

Table 5 Significant SNPs^a associated with deregressed EBV for residual variance (dEBV_v)

SNP	Chr	Position (Mb)	BF	MAF	SNP effect	Windows^b	% Var^c	Candidate Genes^d
rs133244984	3	45.30	61.24	0.32	0.00221	Chr3_46	8.67	DPYD
rs137051934	16	20.84	57.29	0.40	0.00190	Chr16_21	5.13	–
rs135408640	3	45.29	35.74	0.41	0.00117	Chr3_46	8.67	DPYD
rs42014753	22	51.60	33.97	0.37	0.00112	Chr22_52	1.73	UBA7, IP6K1, GMPPB, RNF123, MST1, APEH, AMT, RHOA, USP4, USP19, IMPDH2, NDUFAF3, SLC25A20, PRKAR2A, IP6K2, UQCRC1, UCN2, PFKFB4, SHISA5
rs110480161	5	22.01	33.44	0.45	0.00110	Chr5_23	2.38	BTG1
rs136349671	3	44.37	32.98	0.39	0.00106	Chr3_45	1.65	PLPPR4, PLPPR5
rs137143404	3	41.54	27.60	0.50	−0.00087	Chr3_42	1.54	–
rs135488380	3	45.34	23.95	0.34	0.00079	Chr3_46	8.67	DPYD
rs137135953	28	41.34	23.88	0.37	0.00074	Chr28_42	0.84	BMPR1A, ADIRF, GLUD1
rs133451489	12	4.46	23.48	0.39	−0.00072	Chr12_5	1.69	–
rs109757968	21	62.41	20.46	0.33	0.00065	Chr21_63	0.67	TCL1B, TCL1A, BDKRB2, BDKRB1, AK7
rs136908466	5	22.06	20.28	0.43	−0.00063	Chr5_23	2.38	BTG1
rs137014141	14	14.47	20.16	0.35	0.00062	Chr14_15	0.85	–

^a Single nucleotide polymorphisms (SNPs) that showed a strong association with ln_\( {\upsigma}_{\widehat{\mathrm{e}}}^2 \) according Bayes Factor (BF > 20)
^b Represented by chromosome (Chr) and physical position (in Mb) (i.e. Chr_Mb)
^c Proportion of genetic variance in each 1-Mb window
^d Ensembl Database UMD3.1. See the complete gene list in each window in Additional file 1

ISSN: 1471-2164