Table 1 Selected gene ontologies over-represented in putative sweeps
From: Analysis of porcine body size variation using re-sequencing data of miniature and large pigs
No. | Fisher-P | Empirical p-value | Number of genes in term and sweep | Fold Enr. | GO Term Name |
|---|---|---|---|---|---|
1 | 0.0017 | 0.0002 | 7 | 3.94 | Z disc |
2 | 0.0012 | 0.0014 | 4 | 0.26 | negative regulation of transcription from RNA polymerase II promoter |
3 | 0.0050 | 0.0040 | 5 | 4.38 | protein tyrosine/serine/threonine phosphatase activity |
4 | 0.0172 | 0.0059 | 4 | 3.94 | Microvillus |
5 | 0.0060 | 0.0063 | 4 | 5.25 | regulation of alternative mRNA splicing, via spliceosome |
6 | 0.0149 | 0.0067 | 13 | 1.99 | mitochondrial inner membrane |
7 | 0.0033 | 0.0067 | 10 | 2.75 | protein dephosphorylation |
8 | 0.0024 | 0.0078 | 54 | 1.52 | Mitochondrion |
9 | 0.0096 | 0.0081 | 3 | 6.44 | leukocyte tethering or rolling |
10 | 0.0125 | 0.012 | 3 | 5.91 | ventricular cardiac muscle cell action potential |
22 | 0.0272 | 0.0222 | 10 | 2.13 | actin cytoskeleton |
25 | 0.0101 | 0.0239 | 2 | 11.81 | mitochondrial electron transport, ubiquinol to cytochrome c |
27 | 0.0101 | 0.0248 | 2 | 11.81 | positive regulation of growth |
31 | 0.006 | 0.0286 | 4 | 5.25 | social behavior |