Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

BMC Genomics

Table 4 The number of each Cufflinks “class code” in the transcriptome merged from all tissues

“=” is a complete match of an existing transcript in the NCBI annotation. “j” is a potential novel isoform of an existing transcript. “u” is an unknown intergenic transcript. “x” is an exonic overlap on the opposite strand. “o” is an overlap with annotated exons, but is not classed as “j” because no splice sites match. “s” is an intronic overlap on the opposite strand. See http://cole-trapnell-lab.github.io/cufflinks/cuffcompare/ for more details

ISSN: 1471-2164