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Table 1 Distribution of interactions of sRNAs that recognize multiple mRNA targets

From: Codon usage and modular interactions between messenger RNA coding regions and small RNAs in Escherichia coli

sRNA

Total number of targets

Zones (number of interactions)

OmrA

50

A1 (39), A2 (21), B (0)

RyhB

43

A1 (16), A2 (33), A3 (8)

OmrB

26

A1(19), A2(18), B (0)

GcvB

26

A (19), B (0), C (7), D (0)

Spot42

23

A1 (6), A2 (8), A3 (14), B (0), C (1)

OxyS

18

A (8), B (0), C1 (3), C2 (9), D (0)

MicA

14

A (14), B (0)

RybB

11

A (11), B (0)

FnrS

10

A1 (2), A2 (8), A3 (3), B (0)

DsrA

10

A (0), B1 (6), B2 (8), B3 (1), C (0)

SgrS

8

A (0), B (8), C (0)

MicC

8

A (2), B (0), C (6), D (0)

MicF

7

A1 (5), A2 (2), C (0)

RprA

6

A (0), B (6), C (0)

CyaR

4

A1 (2), A2 (3), B (0)

RygD

4

A (0), B (1), C (0), D (1), E (0), F (1), G (0), H (1), I (0)

  1. The table shows the list of sRNAs with multiple targets (> 4), the total number of interactions, the zones (or subzones) identified with the density map analysis, and the number of interactions by zone (or subzone).