Table 2 Conserved mRNA motifs that recognize modular sRNA sequences
sRNA(a) | p-value(b) | Motif size(c) | Targets(d) | Motif(e) | Number of sequences(f) |
|---|---|---|---|---|---|
OmrA-A1 | 9.6 × 10−10 | 6 | 21 (gntP, ygjN, hokB, ssuC, csgD, ybeT, mipA, clpB, yzgL, ompT, narH, fecA, xylH, fepA, fecD, uup, csgB, csiE, folP, sufD, glmM) |
| 21/39 |
OmrA-A2 | 7.9 × 10−3 | 6 | 20 (malK, gmhB, xylH, yrfC, deoR, btuB, yccS, cydD, glcD, hokD, yhbE, yaeP, cheZ, yeaZ, yadD, hisM, ydhT, ydbC, fdoI, fimF) |
| 20/20 |
RyhB-A2 | 8.9 × 10−13 | 8 | 19 (sucD, proA, ygiQ, yagJ, yegK, yiaM, bfr, ydaN, sucB, sugE, yadS, metH, ygiT, mdh, metI, citG, yagT, fumA, shiA) |
| 19/33 |
RyhB-A3 | 1.4 × 10−3 | 8 | 5 (ompC, galK, metI, sodB, iscS) |
| 5/8 |
GcvB-A | 7.3 × 10−6 | 10 | 17 (oppA, ybdH, ilvC, livK, thrL, ompA, iciA, ompF, dppA, ompC, sodB, ndK, livJ, ptsG, yaeC, gltI, sstT) |
| 17/19 |
Spot42-A1 | 5.1 × 10−5 | 8 | 6 (gltA, atoD, nanC, paaK, galK, xylF) |
| 6/6 |
Spot42-A3 | 1.7 × 10−11 | 8 | 10 (fucP, ompC, ompA, glpF, fucI, ompF, puuE, ascF, dppA, galK) |
| 10/14 |
OxyS-A | 1.4 × 10−2 | 7 | 6 (yccE, gfcB, yheN, yobF, yeaK, moaD) |
| 6/6 |
