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Table 2 Categorization of contig alignments

From: Linked read technology for assembling large complex and polyploid genomes

Category No. Contigs Uniquely Aligned to REF (% of total classified)
LR Contigs Trimmed LR Contigs MAGIs Sim 1a Sim 2b Sim 3c ABySS
Fully aligned 156,841 (79.8) 179,237 (91.0) 101,265 (94.1) 233,396 (94.0) 240,866 (94.3) 233,758 (94.2) 4,532,012 (98.6)
With tails 39,754 (20.2) 17,812 (9.04) 6317 (5.87) 14,785 (5.96) 14,443 (5.66) 14,429 (5.81) 63,859 (1.39)
Unclassified 25,936 25,196 2083 8074 7438 8862 18,463
Total Classified 196,595 197,049 107,582 248,181 255,309 248,187 4,595,871
  1. aSimulation 1: 50 kb molecule length and 400 M reads
  2. bSimulation 2: 80 kb molecule length and 400 M reads
  3. cSimulation 3: 50 kb molecule length and 800 M reads