Table 2 Categorization of contig alignments
From: Linked read technology for assembling large complex and polyploid genomes
Category | No. Contigs Uniquely Aligned to REF (% of total classified) | ||||||
|---|---|---|---|---|---|---|---|
LR Contigs | Trimmed LR Contigs | MAGIs | Sim 1a | Sim 2b | Sim 3c | ABySS | |
Fully aligned | 156,841 (79.8) | 179,237 (91.0) | 101,265 (94.1) | 233,396 (94.0) | 240,866 (94.3) | 233,758 (94.2) | 4,532,012 (98.6) |
With tails | 39,754 (20.2) | 17,812 (9.04) | 6317 (5.87) | 14,785 (5.96) | 14,443 (5.66) | 14,429 (5.81) | 63,859 (1.39) |
Unclassified | 25,936 | 25,196 | 2083 | 8074 | 7438 | 8862 | 18,463 |
Total Classified | 196,595 | 197,049 | 107,582 | 248,181 | 255,309 | 248,187 | 4,595,871 |