Table 2 Comparison of pfam domains associated to stress tolerance and antagonistic activities in the genomes of T. atrobrunneum ITEM 908 and 20 other Trichoderma spp. strains with different lifestyles
PFAM domain | Function/Process | T. atrobrunneum ITEM 908 | T. asperellum B05 | T. atroviride IMI 206040 | T. atroviride JCM 9410 | T. atroviride XS2015 | T. gamsii T6085 | T. guizhouense NJAU 4742 | T. hamatum GD12 | T. harzianum B97 | T. harzianum T6776 | T. koningii JCM 1883 | T. longibrachiatum SMF2 | T. parareesei CBS 125925 | T. pleuroti TPhu1 | T. reesei CBS 999.97 | T. reesei QM6a | T. reesei RUT. C-30 | T. virens FT-333 | T. virens Gv29–8 | T. virens IMI 304061 | T. virens IMV 00454 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ABC trasporter region | Transmembrane transport | 60 | 55 | 60 | 60 | 60 | 52 | 68 | 54 | 68 | 61 | 67 | 68 | 67 | 67 | 68 | 68 | 68 | 60 | 60 | 68 | 77 |
Adenylate cyclase | Regulation, light-response | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Cellulase glucan 1,3-beta-glucosidase | Synthesis and degradation of complex carbohydrates (CAZyme) | 9 | 8 | 10 | 10 | 10 | 11 | 10 | 10 | 9 | 10 | 8 | 8 | 9 | 9 | 9 | 9 | 8 | 11 | 11 | 15 | 10 |
Chitobiosidase | CAZyme | 9 | 10 | 13 | 13 | 13 | 13 | 9 | 12 | 9 | 9 | 8 | 8 | 7 | 7 | 8 | 8 | 8 | 9 | 9 | 10 | 12 |
Glutathione transferase | Stress tolerance, detoxification | 77 | 44 | 65 | 64 | 66 | 62 | 74 | 54 | 66 | 74 | 61 | 60 | 65 | 67 | 64 | 64 | 64 | 66 | 65 | 93 | 83 |
Glycoside hydrolase | CAZyme | 247 | 220 | 236 | 241 | 235 | 246 | 246 | 228 | 251 | 251 | 212 | 213 | 210 | 232 | 208 | 210 | 206 | 237 | 236 | 288 | 235 |
Glycoside hydrolase: Chitinase | CAZyme | 24 | 24 | 30 | 31 | 30 | 25 | 23 | 22 | 26 | 27 | 21 | 20 | 22 | 23 | 18 | 19 | 20 | 31 | 31 | 38 | 23 |
Glycoside hydrolase: Xylanase | CAZyme | 5 | 3 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 4 | 4 | 4 | 4 | 4 | 5 | 5 | 3 | 3 | 3 | 6 |
Hydrophobin | Light-response, adhesion to surfaces | 10 | 14 | 12 | 12 | 10 | 16 | 7 | 17 | 10 | 12 | 11 | 11 | 9 | 10 | 11 | 11 | 11 | 10 | 10 | 12 | 10 |
HSP70 | Stress tolerance | 17 | 16 | 18 | 18 | 18 | 17 | 16 | 16 | 18 | 17 | 17 | 18 | 18 | 17 | 17 | 18 | 18 | 17 | 17 | 20 | 19 |
Kelch motif | Regulation | 19 | 18 | 19 | 19 | 19 | 19 | 17 | 20 | 20 | 18 | 20 | 20 | 20 | 18 | 20 | 20 | 20 | 18 | 18 | 18 | 51 |
Methyltransferase | Gene regulation | 101 | 71 | 89 | 88 | 87 | 87 | 109 | 77 | 102 | 102 | 88 | 88 | 89 | 97 | 89 | 91 | 89 | 89 | 90 | 111 | 112 |
N-acetyl-beta-D-glucosaminidase | CAZyme | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
Peptidase | Parasitism | 182 | 139 | 163 | 161 | 162 | 161 | 176 | 145 | 178 | 174 | 154 | 155 | 160 | 173 | 160 | 161 | 162 | 159 | 155 | 182 | 187 |
Polygalacturonase | CAZyme | 6 | 4 | 5 | 6 | 5 | 8 | 5 | 6 | 6 | 3 | 3 | 3 | 5 | 4 | 5 | 4 | 3 | 7 | 7 | 6 | 5 |