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Table 4 Putative causal genes for identified QTL affecting resistance to clinical mastitis

From: Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle

QTL Gene Source*
3: 91961838~ 93,178,041 FAM151A Gene analysis and RNA-seq
4: 57757451~ 58,741,047 IMMP2L Gene analysis and MP
5: 105444242~ 106,622,012 FGF6 and/or CCND2 Gene analysis and KEGG / Gene analysis, KEGG and nearest gene
6: 23219637~ 23,719,758 NFKB1 Gene analysis, KEGG, GO, MP and RNA-seq
6: 88479895~ 88,980,376 GC Gene analysis and MP
6: 92131530~ 93,382,644 NAAA and/or SHROOM3 RNA-seq and gene analysis / RNA-seq and gene analysis
11: 88150188~ 88,993,125 ID2 Gene analysis and MP
13: 61295534~ 62,267,717 CCM2L and/or HCK Gene analysis, GO, MP and RNA-seq / Gene analysis, GO, MP and RNA-seq
16: 47048599~ 48,086,099 HES2 and/or ACOT7 and/or KCNAB2 Gene analysis and RNA-seq / Gene analysis, nearest gene and RNA-seq / Gene analysis and RNA-seq
19: 42148461~ 43,288,858 KRT32 and/or DHX58 and/or KCNH4 and/or STAT5A and/or STAT3 Gene analysis and RNA-seq / Gene analysis, GO, MP and RNA-seq / Gene analysis, MP and RNA-seq / Gene analysis, nearest gene, KEGG, GO and MP / Gene analysis, KEGG, MP and RNA-seq
20: 38221493~ 38,721,830 CAPSL and/or SPEF2 Gene analysis and RNA-seq / Gene analysis nearest gene and GO
25: 35104498~ 35,604,430 ORAI2 / CUX1 Gene analysis, MP and RNA-seq / Gene analysis, nearest gene and MP
  1. Note, * we used ‘/’ to separate the evidence for different genes, MP stands for mammalian phenotype database