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Table 2 Number of features with CPM > 0

From: A comparative analysis of library prep approaches for sequencing low input translatome samples

Kit Sample type Number of features with coverage (CPM > 0) Number of reads of all expressed features (CPM > 0)
Replicate avg Replicate avg
1 2 3 1 2 3
NEB Input 13,543 12,464 11,419 12,475 22,373,163 26,292,017 22,305,929 23,657,036
IP 11,059 12,165 14,331 12,518 16,668,355 27,323,849 15,122,257 19,704,820
NuG Input 16,946 16,458 15,624 16,343 5,529,417 7,615,866 7,482,819 6,876,034
IP 17,715 17,841 18,198 17,918 3,223,153 5,319,712 5,141,329 4,561,398
SMTer Input 12,281 10,184 10,929 11,131 759,221 762,562 750,159 757,314
IP 12,422 11,168 15,684 13,091 701,059 645,414 464,199 603,557
Tru4 Input 19,906 19,863 19,631 19,800 35,368,451 45,466,334 31,299,550 37,378,112
IP 17,467 18,899 21,161 19,176 36,785,680 28,571,125 18,031,264 27,796,023
Tru70 Input 15,957 15,577 16,082 15,872 32,103,296 33,797,108 25,797,283 30,565,896
IP 14,430 15,213 15,680 15,108 31,150,532 29,799,544 27,902,766 29,617,614
SMTseq4 Input 19,111 19,287 19,630 19,343 23,573,272 24,615,731 30,217,161 26,135,388
IP 19,835 20,551 20,488 20,291 14,407,184 19,577,709 17,262,557 17,082,483
SMTseq0.25 Input 16,834 16,742 16,117 16,564 23,815,261 24,347,672 22,951,893 23,704,942
IP 16,827 16,870 16,527 16,741 13,971,566 15,047,219 14,691,099 14,569,961