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Table 2 Summary of identified virus-associated contigs

From: RNA viromes of the oriental hybrid lily cultivar “Sorbonne”

Study

Project No.

SRA No.

Virus

No. of contigs

Minimum contig length (bp)

Maximum contig length (bp)

Study A

PRJNA192656

SRR787322

PlAMV

4

6140

6149

Study A

PRJNA192656

SRR787322

LMoV

2

9656

9661

Study A

PRJNA192656

SRR787322

LSV

4

3611

4775

Study A

PRJNA192656

SRR787322

CMV RNA3

3

289

2196

Study A

PRJNA192656

SRR787322

CMV RNA1

12

262

731

Study A

PRJNA192656

SRR787322

CMV RNA2

6

315

1013

Study B

PRJNA435633

SRR6837843

PlAMV

2

1562

4501

Study B

PRJNA435633

SRR6837844

PlAMV

2

788

5112

Study B

PRJNA435633

SRR6837845

PlAMV

23

204

5227

Study B

PRJNA435633

SRR6837846

PlAMV

4

382

1412

Study B

PRJNA435633

SRR6837847

PlAMV

6

232

3790

Study B

PRJNA435633

SRR6837848

PlAMV

11

275

4485

Study B

PRJNA435633

SRR6837850

PlAMV

20

201

5434

Study B

PRJNA435633

SRR6837851

PlAMV

18

277

2715

Study B

PRJNA435633

SRR6837851

TRV RNA2

5

1224

3669

Study B

PRJNA435633

SRR6837851

TRV RNA1

18

218

6773

Study B

PRJNA435633

SRR6837852

PlAMV

15

214

4188

Study B

PRJNA435633

SRR6837853

PlAMV

6

232

3861

Study B

PRJNA435633

SRR6837854

PlAMV

7

237

3729

Study B

PRJNA435633

SRR6837855

PlAMV

5

818

6145

Study B

PRJNA435633

SRR6837856

PlAMV

6

779

4446

Study C

PRJNA341300

SRR4125791

CMV RNA3

2

917

1237

Study C

PRJNA341300

SRR4125791

CMV RNA1

2

411

2774

Study C

PRJNA341300

SRR4125791

CMV RNA2

1

 

2688

Study C

PRJNA341300

SRR4125791

TVX

6

312

2162

Study C

PRJNA341300

SRR4125791

LSV

6

201

855

Study C

PRJNA341300

SRR4125791

LMoV

2

392

8952

Study C

PRJNA341300

SRR4128962

TVX

22

205

1442

Study C

PRJNA341300

SRR4128962

LMoV

12

332

5408

Study C

PRJNA341300

SRR4128962

CMV RNA3

3

201

1762

Study C

PRJNA341300

SRR4128962

CMV RNA1

2

378

2768

Study C

PRJNA341300

SRR4128962

CMV RNA2

1

 

2791

Study C

PRJNA341300

SRR4128962

LSV

9

231

2183

Study C

PRJNA341300

SRR4128962

PlAMV

0

  

Study C

PRJNA341300

SRR4128968

LMoV

7

282

5360

Study C

PRJNA341300

SRR4128968

CMV RNA3

4

514

985

Study C

PRJNA341300

SRR4128968

CMV RNA1

3

297

2751

Study C

PRJNA341300

SRR4128968

CMV RNA2

1

 

2686

Study C

PRJNA341300

SRR4131341

LSV

8

205

3626

Study C

PRJNA341300

SRR4131341

LMoV

2

4302

5349

Study C

PRJNA341300

SRR4131341

TVX

9

276

1914

Study C

PRJNA341300

SRR4131341

CMV RNA3

5

246

873

Study C

PRJNA341300

SRR4131341

CMV RNA1

3

376

1708

Study C

PRJNA341300

SRR4131341

CMV RNA2

2

913

2004

Study C

PRJNA341300

SRR4131406

LSV

10

202

2593

Study C

PRJNA341300

SRR4131406

LMoV

4

1993

7253

Study C

PRJNA341300

SRR4131406

TVX

10

239

962

Study C

PRJNA341300

SRR4131406

CMV RNA3

5

201

352

Study C

PRJNA341300

SRR4142853

LMoV

3

207

8811

Study C

PRJNA341300

SRR4142853

TVX

5

350

2141

Study C

PRJNA341300

SRR4142853

CMV RNA3

2

898

1251

Study C

PRJNA341300

SRR4142853

LSV

15

210

1019

Study C

PRJNA341300

SRR4142853

CMV RNA2

3

829

1054

Study C

PRJNA341300

SRR4142853

CMV RNA1

6

205

795

Study C

PRJNA341300

SRR4143329

LSV

9

211

2604

Study C

PRJNA341300

SRR4143329

TVX

9

312

2018

Study C

PRJNA341300

SRR4143329

LMoV

1

 

9631

Study C

PRJNA341300

SRR4143329

CMV RNA3

3

432

924

Study C

PRJNA341300

SRR4143329

CMV RNA1

1

 

217

Study C

PRJNA341300

SRR4143329

CMV RNA2

0

  

Study C

PRJNA341300

SRR4143339

LMoV

3

271

9003

Study C

PRJNA341300

SRR4143339

LSV

6

201

2547

Study C

PRJNA341300

SRR4143339

TVX

6

304

2137

Study C

PRJNA341300

SRR4143339

CMV RNA3

3

254

1001

Study C

PRJNA341300

SRR4143339

CMV RNA2

1

 

332

Study C

PRJNA341300

SRR4143339

CMV RNA1

0

  
  1. Name of identified virus, number of virus-associated contigs, and lengths of minimum and maximum contigs, respectively, are indicated
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BMC Genomics

ISSN: 1471-2164

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