High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

Table 3 Detailed pan-genome statistics and shape

Strain	GenBank Accession no.	Genome size	No. of N bases^a	No of scaffolds	GC%	Total number of genes	Genes encoding					Pan-genome^b
Strain	GenBank Accession no.	Genome size	No. of N bases^a	No of scaffolds	GC%	Total number of genes	Proteins	rRNAs	tRNAs	ncRNA	CRISPR	Core genes	Accessory genes	Unique genes
P. parmentieri strains
IFB5408	CP026977	5,022,017	0	1	50.40	4707	4420	22	77	8	4	3706	756	45
IFB5427	CP027260	5,125,304	0	1	50.41	4842	4561	22	76	8	4	3706	808	135
IFB5432	CP026979	5,010,533	0	1	50.45	4709	4406	22	77	8	4	3706	632	133
IFB5441	CP026980	5,082,177	0	1	50.29	4782	4492	22	76	9	4	3706	698	177
IFB5485	CP026981	4,885,249	0	1	50.56	4534	4252	22	77	8	4	3706	619	7
IFB5486	CP026982	5,038,122	0	1	50.49	4783	4454	22	77	8	4	3706	822	12
IFB5597	PSZH00000000	5,046,647	0	5	50.57	4734	4443	22	77	7	4	3706	652	174
IFB5604	CP026983	4,877,201	0	1	50.56	4535	4249	22	77	8	4	3706	610	19
IFB5605	CP026984	5,040,694	100	1	50.44	4762	4494	22	77	8	4	3706	811	58
IFB5619	CP026985	4,959,302	0	1	50.60	4612	4328	22	77	8	4	3706	673	31
IFB5623	CP026986	5,006,798	100	1	50.33	4713	4422	22	77	8	4	3706	694	112
IFB5626	PSZG00000000	5,059,731	100	2	50.48	4790	4519	22	77	8	4	3706	810	85
CFBP 8475^T	NZ_CP015749.1	5,030,841	0	1	50.40	4772	4462	22	77	8	4	3706	755	40
SCC3193	NC_017845.1	5,164,411	0	1	50.37	4841	4449	22	78	8	4	3706	486	346
WPP0163	NC_013421.1	5,063,892	0	1	50.48	4690	4423	22	75	8	4	3706	604	181
P. parmentieri plasmid pPAR01
pPAR01		CP027260	101,998	0	1	49.45

ISSN: 1471-2164