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Table 3 Detailed pan-genome statistics and shape

From: High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes

Strain GenBank Accession no. Genome size No. of N basesa No of scaffolds GC% Total number of genes Genes encoding Pan-genomeb
Proteins rRNAs tRNAs ncRNA CRISPR Core genes Accessory genes Unique genes
P. parmentieri strains
IFB5408 CP026977 5,022,017 0 1 50.40 4707 4420 22 77 8 4 3706 756 45
IFB5427 CP027260 5,125,304 0 1 50.41 4842 4561 22 76 8 4 3706 808 135
IFB5432 CP026979 5,010,533 0 1 50.45 4709 4406 22 77 8 4 3706 632 133
IFB5441 CP026980 5,082,177 0 1 50.29 4782 4492 22 76 9 4 3706 698 177
IFB5485 CP026981 4,885,249 0 1 50.56 4534 4252 22 77 8 4 3706 619 7
IFB5486 CP026982 5,038,122 0 1 50.49 4783 4454 22 77 8 4 3706 822 12
IFB5597 PSZH00000000 5,046,647 0 5 50.57 4734 4443 22 77 7 4 3706 652 174
IFB5604 CP026983 4,877,201 0 1 50.56 4535 4249 22 77 8 4 3706 610 19
IFB5605 CP026984 5,040,694 100 1 50.44 4762 4494 22 77 8 4 3706 811 58
IFB5619 CP026985 4,959,302 0 1 50.60 4612 4328 22 77 8 4 3706 673 31
IFB5623 CP026986 5,006,798 100 1 50.33 4713 4422 22 77 8 4 3706 694 112
IFB5626 PSZG00000000 5,059,731 100 2 50.48 4790 4519 22 77 8 4 3706 810 85
CFBP 8475T NZ_CP015749.1 5,030,841 0 1 50.40 4772 4462 22 77 8 4 3706 755 40
SCC3193 NC_017845.1 5,164,411 0 1 50.37 4841 4449 22 78 8 4 3706 486 346
WPP0163 NC_013421.1 5,063,892 0 1 50.48 4690 4423 22 75 8 4 3706 604 181
P. parmentieri plasmid pPAR01              
pPAR01 CP027260 101,998 0 1 49.45         
  1. aNumber of undetermined bases
  2. bThe pan-genome content has been calculated on PGAP annotated genomes