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Table 1 Effect of correcting palindromes

From: Correcting palindromes in long reads after whole-genome amplification

Sample Before cleaning Reads with detectable palindromes After correcting
  Number of reads Average length (b) Number of reads Number of reads (%) Number of reads Average length (b)
Ath-WGA1 462,138 9326 221,001 47.8 869,826 4660
Ath-WGA2 447,364 8544 195,263 43.6 769,027 4721
Ath-Ctrl 940,162 5680 4714 0.5 938,196 5681
GorY-WGA 3,596,236 5468 426,188 11.8 4,546,488 4234
  1. Effect of correcting palindromes on the number reads and average lengths of these reads. Note: the Ath-Ctrl shows a small increase in average read length after correction and a lower number of reads. This is because Pacasus removes very short reads from the output