Skip to main content

Table 2 Read mapping statistics

From: Correcting palindromes in long reads after whole-genome amplification

 

Reads mapped (%)

Avg. coverage

Avg. read length

Alignment filter

–

80%

95%

–

80%

95%

–

80%

95%

Ath-WGA

99

44

34

40.5

17.4

13.4

8987

5568

5397

Ath-Clean

99

81

66

55.1

48.1

41.2

4690

4532

4697

Ath-Ctrl

95

72

57

34.2

29.2

24.8

5799

5583

5852

  1. Statistics of read mappings with BLASR to the TAIR10 reference genome, calculated without filtering for a minimum read alignment length (‘-’) and after filtering for reads aligned with at least 80% or 95% nucleotide identity
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us