Table 3 Statistics on the de novo assemblies
From: Correcting palindromes in long reads after whole-genome amplification
| Â | PacBio-only (Canu) | Hybrid (DBG2OLC/Sparse) | ||||
|---|---|---|---|---|---|---|
Read set | Ath-Ctrl (C1) | Ath-WGA (C2) | Ath-Clean (C3) | Ath-Ctrl (D1) | Ath-WGA (D2) | Ath-Clean (D3) |
No. contigs | 852 | 2128 | 1015 | 476 | 4818 | 1753 |
Ass. length (Mbp) | 115.6 | 116.8 | 123.9 | 110.9 | 108.9 | 131.0 |
Longest contig (Kbp) | 1181 | 655 | 3402 | 5667 | 246 | 2239 |
GC (%) | 36.0 | 36.2 | 36.12 | 35.97 | 36.57 | 36.21 |
N50 (Kbp) | 293 | 73 | 302 | 823 | 32 | 278 |
L50 | 117 | 479 | 109 | 33 | 951 | 113 |
Covered (%) | 86.6 | 91.2 | 97.3 | 85.1 | 49.7 | 96.3 |
Dupl. ratio | 1.09 | 1.07 | 1.06 | 1.08 | 1.34 | 1.13 |