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Table 3 Statistics on the de novo assemblies

From: Correcting palindromes in long reads after whole-genome amplification

  PacBio-only (Canu) Hybrid (DBG2OLC/Sparse)
Read set Ath-Ctrl (C1) Ath-WGA (C2) Ath-Clean (C3) Ath-Ctrl (D1) Ath-WGA (D2) Ath-Clean (D3)
No. contigs 852 2128 1015 476 4818 1753
Ass. length (Mbp) 115.6 116.8 123.9 110.9 108.9 131.0
Longest contig (Kbp) 1181 655 3402 5667 246 2239
GC (%) 36.0 36.2 36.12 35.97 36.57 36.21
N50 (Kbp) 293 73 302 823 32 278
L50 117 479 109 33 951 113
Covered (%) 86.6 91.2 97.3 85.1 49.7 96.3
Dupl. ratio 1.09 1.07 1.06 1.08 1.34 1.13
  1. Statistics on the PacBio-only and hybrid assemblies of the various datasets. Note that the TAIR10 reference genome is 119.7 Mb, with the full genome thought to be approximately 135 Mb [21]