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Table 5 Read mapping statistics on the human and different GorY assemblies

From: Correcting palindromes in long reads after whole-genome amplification

 

HiSeq

GorY-WGA

GorY-Clean

Assembly

Length (Mbp)

Genome coverage

Read cov.

Genome coverage

Read cov.

Genome coverage

Read cov.

  

(Mbp)

(%)

 

(Mbp)

(%)

 

(Mbp)

(%)

 

HumY

26.8

22.3

83

1897

18.2

68

58.87

18.5

69

74.84

GorY

23.0

18.3

80

1169

21.1

92

71.33

21.1

92

99.15

GorY-WGA

26.5

24.9

94

1353

26.5

100

73.15

26.5

100

97.08

GorY-Clean

24.3

22.4

92

1586

24.3

100

83.21

24.3

100

109.67

  1. Mapping of HiSeq, PacBio WGA and PacBio cleaned reads on the human Y chromosome (HumY), the gorilla Y chromosome (GorY) and the newly created gorilla Y assemblies (GorY-WGA, GorY-Clean). The read coverage is the average number of reads that a nucleotide has aligned to it
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BMC Genomics

ISSN: 1471-2164

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