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Table 2 Genetic diversity and neutrality analysis of the ORs and OBPs genes down-regulated in the domestic silkworms

From: Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics

Gene name

CDS length (nt)

Bombyx mori

Bombyx mandarina

No. of strains

CDS

Gene sequence and 2-Kb FR

No. of samples

CDS

Gene sequence and 2-Kb FR

Ï€

d N /d S

Ï€

D T

D*

F*

Ï€

d N /d S

Ï€

D T

D*

F*

OBP15

366

8

0.0021

0.1135

0.0136

0.6168

0.3254

0.4399

6

0.0063

0.0759

0.0191

−0.3188

− 0.2501

− 0.2914

OBP21

627

8

0.0049

0.1650

0.0078

0.3158

0.3451

0.3778

6

0.0061

0.3491

0.0088

−0.0586

− 0.0808

− 0.0837

OBP37

330

8

0.0118

0.0420

0.0010

−0.0959

−0.0332

− 0.0533

6

0.0137

0.0297

0.0310

−0.3393

−0.2830

− 0.3247

PBP2

372

8

0.0126

0.1672

0.0195

−0.1289

0.0866

0.0403

7

0.0119

0.0846

0.0304

−0.4138

−0.3598

− 0.4128

OR4

1275

8

0.0035

0.0773

0.0090

0.6312

0.5437

0.6303

6

0.01

0.1245

0.0149

−0.4607

−0.3944

−0.4496

OR10

1167

8

0.0120

0.1913

0.0193

0.0958

0.2275

0.2197

6

0.017

0.1237

0.0271

−0.3930

−0.3541

−0.3990

OR12

1179

8

0.0032

0.0731

0.0032

0.1175

0.3814

0.3566

6

0.0089

0.3970

0.0092

−0.6680

−0.6418

−0.7184

OR14

1173

8

0.0069

0.0466

0.0119

0.2493

0.3197

0.3388

6

0.0115

0.0712

0.0195

−0.4780

−0.4595

−0.5101

OR30

1173

7

0.0110

0.2339

0.0113

−0.1433

−0.1843

− 0.1952

6

0.0146

0.1741

0.0141

0.0283

0.1030

0.0958

OR34

762

8

0.0054

0.1868

0.0119

0.1960

0.1716

0.1980

7

0.0075

0.1440

0.0114

−0.4507

−0.3997

− 0.4559

OR37

1137

8

0.0031

0.0449

0.0039

0.6891

0.3130

0.4475

6

0.0085

0.2474

0.0083

−0.6435

−0.5994

−0.6693

OR44

972

8

0.0046

0.0825

0.0078

0.3408

0.5745

0.5807

6

0.0051

0.0204

0.0168

−0.4299

−0.3900

−0.4387

OR56

1206

8

0.0017

0.0905

0.0038

−0.8942

−1.0676

−1.1474

6

0.0166

0.0587

0.0205

−0.5050

−0.4623

− 0.5191

OR57

1143

8

0.0027

0.4729

0.0030

−0.8150

−0.8933

− 0.9773

6

0.0012

0.6844

0.0023

0.0001

0.0851

0.0735

OR59

984

6

0.0100

0.4959

0.0182

0.1722

0.0275

0.0687

7

0.0066

0.2476

0.0162

−0.3474

−0.3338

− 0.3738

OR72

1014

8

0.0080

0.7472

0.0042

−0.9235

−0.8874

−1.0010

6

0.0195

0.6895

0.0075

0.0445

0.0801

0.0798

OR75

1158

8

0.0032

0.3597

0.0100

−0.9937

−0.8275

−0.9684

7

0.0099

0.1459

0.0213

−0.4792

−0.4409

− 0.4989

  1. CDS coding regions; gene sequence contained coding regions and introns; 2-Kb FR 2-Kb 3′ and 5′ flanking regions, NA not applicable because of zero synonymous differences; π, the average number of nucleotide differences per site between sequences; DT, Tajima’s D value; D*, Fu and Li’s D* value; F*, Fu and Li’s F* value
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BMC Genomics

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