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Table 3 Imprinted genes found in PO-ASE analyses (p < 0.01) that have previously been reported in humans, mice and cattle

From: Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

Gene Name Bovine Ensemble ID Expressed allele (Human)a Expressed allele (Mouse)a Expressed allele (Bovine)a Expressed Allele (Bovine)b PO-ASE More expressed allele RNA-Seq dataset No. tSNP No. dSNP
NAA60 ENSBTAG00000004875 Maternal Not reported Not reported Not reported Maternal Holstein blood 1 1
RB1 ENSBTAG00000006640 Maternal Not imprinted Not reported Paternal Paternal Holstein blood 1 14
AIM1 ENSBTAG00000017527 Paternal Not reported Not reported Not reported Paternal Holstein blood 1 9
PLAGL1 ENSBTAG00000026523 Paternal Paternal Paternal Not reported Paternal Holstein blood 1 3
DGCR6L ENSBTAG00000047299 Random Not reported Not reported Not reported Paternal Angus muscle 1 3
MKRN3 ENSBTAG00000008306 Paternal Paternal Not reported Not reported Maternal Angus liver 1 7
Gatm ENSBTAG00000005586 Not reported Maternal Not reported Not reported Maternal Holstein liver 1 13
Gnai3 ENSBTAG00000013016 Not reported Predicted maternal Not reported Not reported Maternal Holstein blood 1 65
Dhcr7 ENSBTAG00000016465 Not reported Maternal Not reported Not reported Paternal Holstein blood 1 4
Tssc4 ENSBTAG00000047793 Not reported Maternal Maternal Not reported Maternal Holstein blood 1 110
Nap1l4 ENSBTAG00000022160 Not reported Maternal Not reported Not reported Maternal Holstein blood 2 4
Dcn ENSBTAG00000003505 Not reported Maternal Not reported Not reported Maternal Angus muscle 2 240
Igf2 ENSBTAG00000013066 Not reported Paternal Paternal Paternal Paternal Angus muscle 2 5
Igf2r ENSBTAG00000002402 Not reported Maternal Maternal Maternal Maternal Holstein liver 3 31
Impact ENSBTAG00000003035 Not reported Paternal Not reported Paternal Maternal Holstein blood 1 3
  1. aBased on GeneImprint database (http://www.geneimprint.com/site/home)
  2. bBased on Chamberlain et al., 2015 [11]
  3. The imprinted genes discovered with PO-ASE effects at p < 0.01 and their effects as reported in human, mouse and/or cattle. Most of the imprinted genes with PO-ASE were discovered in Holstein blood RNA-Seq dataset. In PLAGL1 and Igf2 the paternal and in Igf2rthe maternal alleles were expressed according to human, mouse and cattle studies