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Table 3 Imprinted genes found in PO-ASE analyses (p < 0.01) that have previously been reported in humans, mice and cattle

From: Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

Gene Name

Bovine Ensemble ID

Expressed allele (Human)a

Expressed allele (Mouse)a

Expressed allele (Bovine)a

Expressed Allele (Bovine)b

PO-ASE More expressed allele

RNA-Seq dataset

No. tSNP

No. dSNP

NAA60

ENSBTAG00000004875

Maternal

Not reported

Not reported

Not reported

Maternal

Holstein blood

1

1

RB1

ENSBTAG00000006640

Maternal

Not imprinted

Not reported

Paternal

Paternal

Holstein blood

1

14

AIM1

ENSBTAG00000017527

Paternal

Not reported

Not reported

Not reported

Paternal

Holstein blood

1

9

PLAGL1

ENSBTAG00000026523

Paternal

Paternal

Paternal

Not reported

Paternal

Holstein blood

1

3

DGCR6L

ENSBTAG00000047299

Random

Not reported

Not reported

Not reported

Paternal

Angus muscle

1

3

MKRN3

ENSBTAG00000008306

Paternal

Paternal

Not reported

Not reported

Maternal

Angus liver

1

7

Gatm

ENSBTAG00000005586

Not reported

Maternal

Not reported

Not reported

Maternal

Holstein liver

1

13

Gnai3

ENSBTAG00000013016

Not reported

Predicted maternal

Not reported

Not reported

Maternal

Holstein blood

1

65

Dhcr7

ENSBTAG00000016465

Not reported

Maternal

Not reported

Not reported

Paternal

Holstein blood

1

4

Tssc4

ENSBTAG00000047793

Not reported

Maternal

Maternal

Not reported

Maternal

Holstein blood

1

110

Nap1l4

ENSBTAG00000022160

Not reported

Maternal

Not reported

Not reported

Maternal

Holstein blood

2

4

Dcn

ENSBTAG00000003505

Not reported

Maternal

Not reported

Not reported

Maternal

Angus muscle

2

240

Igf2

ENSBTAG00000013066

Not reported

Paternal

Paternal

Paternal

Paternal

Angus muscle

2

5

Igf2r

ENSBTAG00000002402

Not reported

Maternal

Maternal

Maternal

Maternal

Holstein liver

3

31

Impact

ENSBTAG00000003035

Not reported

Paternal

Not reported

Paternal

Maternal

Holstein blood

1

3

  1. aBased on GeneImprint database (http://www.geneimprint.com/site/home)
  2. bBased on Chamberlain et al., 2015 [11]
  3. The imprinted genes discovered with PO-ASE effects at p < 0.01 and their effects as reported in human, mouse and/or cattle. Most of the imprinted genes with PO-ASE were discovered in Holstein blood RNA-Seq dataset. In PLAGL1 and Igf2 the paternal and in Igf2rthe maternal alleles were expressed according to human, mouse and cattle studies