CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes

Table 3 Bins reported by the binning tools on the simulated multi-species metagenome. It also shows the number of reads that belong to each genome for each bin, and the time it took each tool to create the bins

Tool	Bins	Total reads by bin	Synechocystis	Dokdonella	Hymnobacter	Microbacteriaceae	Rhizobium	Time (m)
CLAME	7	21,182	21,182	0	0	0	0	3
		18,054	18,054	0	0	0	0
		209,642	0	209,642	0	0	0
		12,152	0	12,152	0	0	0
		13,927	0	13,927	0	0	0
		10,405	0	10,405	0	0	0
		24,315	0	0	0	24,315	0
BiMeta	1	601,624	112,805	376,022	37,599	37,599	37,599	32
MetaProb	5	361,966	1	341,866	108	7236	12,755	11
		27,977	508	12,139	1707	214	13,409
		113,349	111,889	695	641	6	118
		38,400	294	729	34,383	2446	548
		59,932	113	20,593	760	27,697	10,769
MetaBinG	5	410,033	30,727	302,805	23,480	19,944	33,081	120
		73,263	799	57,637	3915	9490	1423
		61,401	56,764	2344	772	1211	310
		24,966	18,955	3042	1079	870	1021
		10,826	12	3800	6444	436	134

ISSN: 1471-2164