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Table 8 Characteristics of the SNPs located in genes involved in galactomannan synthesis in guar

From: Identification and characterization of SSR, SNP and InDel molecular markers from RNA-Seq data of guar (Cyamopsis tetragonoloba, L. Taub.) roots

S. No.

SNP name

SNP allele

Type of SNP

Position

Gene name

Gene description

Function

1

OT697

T/A

TV

1856

LOC106775241

PREDICTED: callose synthase 11-like [Vignaradiata var. radiata]

Control delivery of UDP-Glc to the synthase

2

OT698

A/G

TT

4865

-do-

-do-

-do-

3

OT1715

C/G

TV

5925

glysoja_027079

Callose synthase 3 [Glycine soja]

-do-

4

OT4075

A/T

TV

2011

KK1_031323

Callose synthase 3 [Cajanuscajan]

-do-

5

OT4076

C/G

TV

3624

-do-

-do-

-do-

6

OT4342

T/C

TT

6780

LOC100787540 GLYMA_10G295100

PREDICTED: callose synthase 9-like isoform 1 [Glycine max]

-do-

7

OT1366

T/A

TV

901

LR48_Vigan02g201500

PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Vignaangularis]

-do-

8

OT2742

C/A

TV

898

KK1_009388

Cellulose synthase A catalytic subunit 1 [UDP-forming] [Cajanuscajan]

Mannan biosynthesis

9

OT2743

C/A

TV

899

-do-

-do-

-do-

10

OT2744

T/C

TT

917

-do-

-do-

-do-

11

OT2745

A/G

TT

959

-do-

-do-

-do-

12

OT2746

T/C

TT

960

-do-

-do-

-do-

13

OT2747

G/T

TV

1322

-do-

-do-

-do-

14

OT3490

G/T

TV

594

LOC100798193 GLYMA_06G069600

hypothetical protein GLYMA_06G069600 [Glycine max]

-do-

  1. Abbreviations: TT Transition, TV Transversion, UDP-Glc Uridine diphosphate glucose