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Table 4 Chi-square results of Pfam domain representation in gene models of 9 oomycete assemblies

From: Comparative genomics of downy mildews reveals potential adaptations to biotrophy

Pfam

P. effusa vs all

Peronospora spp. vs. All

Peronospora lineage vs. all

Downy mildew vs. Phytophthora spp.

Pfam title

Category

PF11051

 

8.34e−10

6.11e −10

8.62e−10

Mannosyltransferase

Carbohydrate associated

PF00232

   

7.81e −8

Glycosyl hydrolase family 1

PF00295

 

3.66e−6

7.04e−8

4.71e −11

Glycoside hydrolase family 28

PF00933

 

1.20e−5

1.70e−6

1.69e − 8

Glycosyl hydrolase family 3 N terminal domain

PF01762

   

3.93e −6

Galactosyltransferase

PF01915

  

3.19e− 6

2.45e − 8

Glycoside hydrolase family 3

PF00612

 

2.17e−6

2.88e −7

 

IQ calmodulin binding motif

Calcium associated

PF13202

 

4.68e−6

9.71e −9

9.92e−7

EF hand

PF13499

 

3.70e−8

4.59e −10

9.75e− 8

EF hand

PF13833

  

1.13e −7

 

EF hand

PF00225

 

1.16e−7

7.33e −10

2.75e−6

Kinesin motor domain

Flagella / Motor associated

PF07728

 

9.14e−6

6.35e −8

 

ATPases associated; dynein related subfamily

PF03028

 

6.28e− 9

4.15e −12

9.94e−8

Dynein heavy chain and region D6 of dynein motor

PF08385

  

2.85e −6

 

Dynein heavy chain

PF08393

 

1.94e−9

1.51e −13

3.36e− 9

Dynein heavy chain, N-terminal region 2

PF12774

 

8.43e−9

1.23e −12

4.65e−8

ATPases associated; P-loop containing dynein motor region

PF12775

 

2.04e−8

4.35e − 12

2.18e−7

ATPases associated; P-loop containing dynein motor region

PF12777

 

3.49e−9

3.50e −13

9.69e− 9

Microtubule-binding stalk of dynein motor

PF12780

 

2.21e−7

6.99e −11

1.49e−6

ATPases associated; P-loop containing dynein motor region-D4

PF12781

 

2.74e−8

6.61e −12

3.62e−7

ATPases associated; P-loop containing dynein motor region-D5

PF00050

 

1.46e−8

2.47e −9

1.06e−7

Kazal-type serine protease

Phytopathology associated

PF00734

  

4.92e −6

1.14e−5

Fungal cellulose binding domain

PF07648

 

9.31e−8

4.11e −10

2.77e−08

Kazal domain

PF00544

 

5.44e−7

1.88e−6

9.83e − 10

Pectate lyase

PF00964

 

1.17e−8

5.92e−10

1.87e −12

Elicitin

PF02902

 

2.59e−10

1.53e−14

1.62e −20

ULP1 protease family, C-terminal catalytic domain

PF03211

 

3.68e−13

1.21e−13

6.77e −19

Pectate lyase

PF05630

 

3.81e−09

3.88e−9

9.46e −12

Necrosis inducing protein

PF09461

   

5.22e −6

Phytotoxin PcF

PF16810

6.38e−10

4.13e−32

6.61e−45

1.08e −64

RxLR phytopathogen effector protein.

PF00083

 

3e−7

1e −10

3e−6

Sugar (and other) transporter

Transporter associated

PF00520

1.03e−6

2.86e−14

3.15e −21

7.97e−21

Ion channel family

PF00005

3.84e−6

1.32e−19

9.28e−23

5.70e −32

ABC transporter

PF00664

 

2.11e−9

8.42e-11

2.34e-14

Transmembrane domain of ABC transporters

PF01061

 

2.36e−17

2.11e-20

3.45e-29

ATP-binding cassette transporter

PF03083

 

1.63e−7

1.88e-10

2.16e-14

Sugar efflux transporter for intercellular exchange

PF03092

   

5.98e −7

BT1 family

PF06422

 

3.41e−10

5.84e-10

1.37e-13

CDR ABC transporter

  1. The bold score for each Pfam domain is the best p-value obtained from all four comparisons