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Table 1 Sequence feature comparison between xenomiRs and non-xenomiRs

From: Prediction of plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network models

Feature

p value (Wilcox-rank-sum test)

FDR

Mean (positive)

Mean (negative)

C

1.27E-05

1.66E-04

0.254699729

0.206518506

U

1.03E-03

5.16E-03

0.242165895

0.276586575

AC

8.49E-04

4.69E-03

0.053561834

0.042817287

AU

3.95E-04

3.13E-03

0.051751301

0.068725933

CA

1.23E-10

6.46E-09

0.085152137

0.060351853

GC

1.00E-03

5.16E-03

0.065351632

0.056254644

GU

2.35E-07

4.11E-06

0.034289003

0.057152059

UA

1.13E-09

3.97E-08

0.021754371

0.045343654

AGC

2.00E-05

2.33E-04

0.026437639

0.016911021

CAC

1.27E-07

2.67E-06

0.019516663

0.010089057

CAG

5.85E-11

6.15E-09

0.027642769

0.013855275

CCC

2.41E-04

2.30E-03

0.016600043

0.007669506

GAA

1.32E-03

6.04E-03

0.028207567

0.022570777

GCA

8.94E-06

1.34E-04

0.027717889

0.016944631

GGU

5.00E-04

3.27E-03

0.00755333

0.015033431

GUA

5.30E-04

3.27E-03

0.003583374

0.01049709

UAA

4.42E-04

3.13E-03

0.003479138

0.010353066

UAU

7.81E-09

2.05E-07

0.001510348

0.013291427

UUA

4.47E-04

3.13E-03

0.003682193

0.01009223

UUU

1.09E-03

5.18E-03

0.010166663

0.021144843

GU (seed)

4.75E-05

4.98E-04

0.031124498

0.060686483

GA (seed)

3.27E-04

2.86E-03

0.123493976

0.088110403

UA (seed)

8.28E-04

4.69E-03

0.016064257

0.037508846

  1. Feature comparison was performed between xenomiRs and non-xenomiRs, and 23 features with FDR less than 0.01 were listed. Bold indicates the values are higher and non-bold indicates lower in xenomiRs than non-xenomiRs