A transcriptomic snapshot of early molecular communication between Pasteuria penetrans and Meloidogyne incognita

Table 2 Raw and Quality filtered data statistics for Meloidogyne incognita transcriptomes used in this study. (NE: Non-encumbered nematode J2 s; PE: Pasteuria endospore encumbered nematode J2 s; HQ: high quality)

S. No.	Sample name	Total no. of reads	Total no. of bases	Total No. of HQ bases	% HQ Bases	Total HQ reads	Total no of bases in HQ reads	Total no. of HQ bases in HQ reads	% of HQ bases in HQ reads
	RAW					FILTERED
1	NE-1	32,965,096				32,693,312
	NE-1.1	16,482,548	1,664,737,348	1,650,917,070	99.17	16,346,656	1,651,012,256	1,639,288,636	99.29
	NE-1.2	16,482,548	1,664,737,348	1,643,633,199	98.73	16,346,656	1,651,012,256	1,635,371,533	99.05
2	NE-2	34,946,244				34,621,924
	NE-2.1	17,473,122	1,764,785,322	1,752,922,754	99.33	17,310,962	1,748,407,162	1,738,496,781	99.43
	NE-2.2	17,473,122	1,764,785,322	1,741,373,228	98.67	17,310,962	1,748,407,162	1,731,955,805	99.06
3	PE-1	39,837,260				39,382,816
	PE-1.1	19,918,630	2,011,781,630	1,998,248,213	99.33	19,691,408	1,988,832,208	1,977,968,380	99.45
	PE-1.2	19,918,630	2,011,781,630	1,982,135,511	98.53	19,691,408	1,988,832,208	1,969,001,441	99.00
4	PE-2	37,699,176				37,290,198
	PE-2.1	18,849,588	1,903,808,388	1,891,336,925	99.34	18,645,099	1,883,154,999	1,872,966,510	99.46
	PE-2.2	18,849,588	1,903,808,388	1,876,575,502	98.57	18,645,099	1,883,154,999	1,864,696,419	99.02

ISSN: 1471-2164