Table 3 Summary statistics for sequence quality and alignment information of six breast muscle samples in two groups
Sample | A1 | A2 | A3 | B1 | B2 | B3 |
|---|---|---|---|---|---|---|
Group | Control | Control | Control | Treatment | Treatment | Treatment |
Raw reads | 61,522,238 | 66,734,468 | 55,944,188 | 56,658,102 | 52,848,740 | 63,579,662 |
Raw bases | 9.29E+ 09 | 1.01E+ 10 | 8.45E+ 09 | 8.56E+ 09 | 7.98E+ 09 | 9.6E+ 09 |
Clean reads | 59,695,558 | 64,690,588 | 54,170,296 | 54,959,360 | 51,137,356 | 61,709,484 |
Clean bases | 8.83E+ 09 | 9.57E+ 09 | 8.01E+ 09 | 8.14E+ 09 | 7.55E+ 09 | 9.13E+ 09 |
Error% | 0.0123 | 0.0123 | 0.0126 | 0.0123 | 0.0124 | 0.0122 |
Q30 (%) | 94.91 | 94.84 | 94.52 | 94.82 | 94.67 | 94.99 |
GC contents (%) | 55.00 | 53.92 | 55.35 | 53.95 | 55.94 | 54.66 |
Total mapped reads | 51,698,314 | 56,863,042 | 47,906,218 | 48,284,460 | 45,259,894 | 54,291,950 |
Uniquely mapped reads | 40,680,290 | 45,051,062 | 39,062,890 | 38,983,440 | 37,319,098 | 43,728,402 |
Multiple mapped reads | 11,018,024 | 11,811,980 | 8,843,328 | 9,301,020 | 7,940,796 | 10,563,548 |
Mapping rate (%) | 86.60 | 87.90 | 88.44 | 87.85 | 88.51 | 87.98 |