Skip to main content

Table 3 Putative promoter sequences and Poly(A) signals (PASs) of the VZV transcripts

From: Long-read sequencing uncovers a complex transcriptome topology in varicella zoster virus

 

Search range (nt)

Nr. of motifs

Nr. of transcripts

Mean Distance

SD

GC-box

− 150 to 0

41

55

93.28

33

CCAAT-box

−150 to −40

19

27

93.91

23

TATA-box

−35 to −25

26

44

31.67

1,5

PAS

−50 to 0

61

169

16.11

8.86

  1. The search range position 0 is the position of the TSS in GC-, CCAAT- and TATA-boxes and is the position of the TES for PAS. The distance was calculated between the position of the TSS/TES and the last nucleotide of the motif
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us