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Table 1 Three sets of TF/HM based on their enrichment around TSS

From: Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data

GM12878_rich_factor

unbiased_factor

K562_rich_factor

Factor

f

D signal

Factor

f

D signal

Factor

f

D signal

BCL3

9.28

0.81

NFYB

1.42

0.18

P300

0.60

−0.25

USF2

3.00

0.50

NRF1

1.39

0.16

H3k36me3

0.57

− 0.28

MEF2A

2.80

0.47

BCLAF1

1.29

0.13

GABPA

0.54

− 0.30

MXI1

2.77

0.47

PU.1

1.29

0.13

H4k20me1

0.53

− 0.31

RFX5

2.31

0.39

SMC3

1.24

0.11

EGR1

0.52

− 0.31

EZH2

2.21

0.38

H3k4me3

1.24

0.11

NFYA

0.50

− 0.33

SP1

2.21

0.38

SIX5

1.19

0.09

H3k27me3

0.48

− 0.35

ELK1

1.96

0.33

H3k4me2

1.19

0.09

MAX

0.47

− 0.36

YY1

1.90

0.31

PML

1.11

0.05

NRSF

0.47

− 0.36

CHD2

1.84

0.29

RAD21

1.07

0.03

NFE2

0.45

− 0.38

H3k9me3

1.83

0.29

POL3

1.03

0.02

E2F4

0.42

− 0.41

SRF

1.79

0.28

H3k79me2

1.03

0.02

CFOS

0.42

− 0.41

TBLR1

1.70

0.26

H3k4me1

0.97

−0.01

ETS1

0.39

− 0.43

STAT1

1.57

0.22

CTCF

0.94

− 0.03

CMYC

0.35

− 0.48

TR4

1.53

0.21

TAF1

0.93

− 0.04

COREST

0.26

− 0.58

   

ELF1

0.92

− 0.04

CEBPB

0.23

− 0.62

   

H3k27ac

0.91

− 0.05

ATF3

0.13

− 0.77

   

CREB1

0.90

− 0.05

MAFK

0.13

− 0.77

   

H3k9ac

0.86

− 0.07

JUND

0.04

− 0.92

   

H2AZ

0.82

− 0.10

   
   

STAT5

0.81

− 0.11

   
   

ZBTB33

0.77

− 0.13

   
   

POL2

0.77

− 0.13

   
   

TBP

0.75

− 0.14

   
   

ZNF143

0.72

− 0.17

   
   

CDP

0.69

− 0.18

   
   

CHD1

0.66

− 0.21

   
   

ZNF274

0.66

− 0.21

   
   

MAZ

0.65

− 0.21

   
   

BHLHE40

0.64

− 0.22

   
   

ZNF384

0.62

− 0.24

   
   

USF1

0.61

− 0.24