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Table 1 Three sets of TF/HM based on their enrichment around TSS

From: Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data

GM12878_rich_factor unbiased_factor K562_rich_factor
Factor f D signal Factor f D signal Factor f D signal
BCL3 9.28 0.81 NFYB 1.42 0.18 P300 0.60 −0.25
USF2 3.00 0.50 NRF1 1.39 0.16 H3k36me3 0.57 − 0.28
MEF2A 2.80 0.47 BCLAF1 1.29 0.13 GABPA 0.54 − 0.30
MXI1 2.77 0.47 PU.1 1.29 0.13 H4k20me1 0.53 − 0.31
RFX5 2.31 0.39 SMC3 1.24 0.11 EGR1 0.52 − 0.31
EZH2 2.21 0.38 H3k4me3 1.24 0.11 NFYA 0.50 − 0.33
SP1 2.21 0.38 SIX5 1.19 0.09 H3k27me3 0.48 − 0.35
ELK1 1.96 0.33 H3k4me2 1.19 0.09 MAX 0.47 − 0.36
YY1 1.90 0.31 PML 1.11 0.05 NRSF 0.47 − 0.36
CHD2 1.84 0.29 RAD21 1.07 0.03 NFE2 0.45 − 0.38
H3k9me3 1.83 0.29 POL3 1.03 0.02 E2F4 0.42 − 0.41
SRF 1.79 0.28 H3k79me2 1.03 0.02 CFOS 0.42 − 0.41
TBLR1 1.70 0.26 H3k4me1 0.97 −0.01 ETS1 0.39 − 0.43
STAT1 1.57 0.22 CTCF 0.94 − 0.03 CMYC 0.35 − 0.48
TR4 1.53 0.21 TAF1 0.93 − 0.04 COREST 0.26 − 0.58
    ELF1 0.92 − 0.04 CEBPB 0.23 − 0.62
    H3k27ac 0.91 − 0.05 ATF3 0.13 − 0.77
    CREB1 0.90 − 0.05 MAFK 0.13 − 0.77
    H3k9ac 0.86 − 0.07 JUND 0.04 − 0.92
    H2AZ 0.82 − 0.10    
    STAT5 0.81 − 0.11    
    ZBTB33 0.77 − 0.13    
    POL2 0.77 − 0.13    
    TBP 0.75 − 0.14    
    ZNF143 0.72 − 0.17    
    CDP 0.69 − 0.18    
    CHD1 0.66 − 0.21    
    ZNF274 0.66 − 0.21    
    MAZ 0.65 − 0.21    
    BHLHE40 0.64 − 0.22    
    ZNF384 0.62 − 0.24    
    USF1 0.61 − 0.24