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Table 4 TF pairs with top 10 PCC in GM12878 and K562

From: Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data

Cell line

Index

RAD21/CTCF

RAD21/SMC3

CTCF/SMC3

TAF1/PML

TAF1/POL2

POL2/PML

TBP/POL2

TBP/TAF1

MAX/MXIL

MAX/CMYC

GM12878

R o

0.777

0.781

0.745

0.708

0.761

0.776

0.612

0.577

0.731

0.514

 

PCC

0.787

0.865

0.760

0.735

0.766

0.776

0.710

0.708

0.731

0.514

K562

R o

0.779

0.756

0.672

0.645

0.846

0.692

0.747

0.736

0.555

0.705

 

PCC

0.781

0.830

0.738

0.760

0.828

0.759

0.799

0.819

0.554

0.705

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BMC Genomics

ISSN: 1471-2164

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