Genotype- and tissue-specific miRNA profiles and their targets in three alfalfa (Medicago sativa L) genotypes

BMC Genomics

Table 1 The mapping of total and unique reads obtained from different small RNA libraries

	Altet-4 whole plants		NECS-141 whole plants		NF08ALF06 whole plants		Altet-4 Roots		NECS-141 Roots		NF08ALF06 Roots		Altet-4 Shoots		NCES-141 Shoots
	Total reads	Unique reads	Total reads	Unique reads	Total reads	Unique reads	Total reads	Unique reads	Total reads	Unique reads	Total reads	Unique reads	Total reads	Unique reads	Total reads	Unique reads
cdna	6,858,719	336,266	6,197,308	430,819	8,142,985	493,929	9,352,477	276,276	19,665,339	732,738	8,930,063	352,167	17,117,689	909,491	10,943,411	669,572
ncRNAs	6,810,937	261,134	5,666,067	213,396	7,722,727	284,785	9,633,993	271,496	18,454,661	272,596	8,834,028	237,827	14,718,199	289,087	7,855,629	128,514
pre-miRBase	567,518	3182	943,976	3888	1,162,233	4005	147,326	2409	1,102,879	5780	426,327	3213	2,520,492	7051	3,840,771	6449
repeats	5,451,840	162,552	4,218,992	148,297	5,756,349	183,418	8,267,063	158,310	15,744,403	180,030	7,536,403	146,043	10,855,687	192,377	3,798,312	104,708
genome	8,951,430	1,142,594	9,878,838	2,398,705	11,387,413	2,053,582	11,557,742	784,140	29,143,549	5,078,322	11,588,832	1,488,546	28,744,231	5,246,027	29,192,098	5,834,731
total	12,008,892	2,343,120	11,645,217	3,348,188	15,733,102	3,739,163	14,377,336	1,860,736	33,335,201	6,947,622	14,378,859	2,708,737	42,196,888	8,564,218	34,441,313	7,748,996

ISSN: 1471-2164