NE | LO | % | NE | LO | % | NE | LO | % | NE | LO | % | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 CH261-89C18 | 1 TGMCBA-167P13 | 4 CH261-71L6 | 9 CH261-95N3 | |||||||||
%GC | 47.61 | 59.52 | 44.85 | 42.81 | ||||||||
Satellites | 2 | 580 | 0.34 | 1 | 19 | 0.02 | 0 | 0 | 0 | 0 | 0 | 0 |
Simple repeats | 30 | 988 | 0.58 | 23 | 2011 | 1.91 | 36 | 1910 | 1.02 | 70 | 2777 | 1.43 |
Retroelement | 94 | 16874 | 9.85 | 37 | 11027 | 10.47 | 21 | 3668 | 1.95 | 17 | 3847 | 1.99 |
1) SINEs | 1 | 49 | 0.03 | 0 | 0 | 0 | 2 | 207 | 0.11 | 2 | 353 | 0.18 |
2) LINEs | 92 | 16749 | 9.77 | 33 | 9768 | 9.28 | 19 | 3461 | 1.84 | 13 | 2849 | 1.47 |
3) LTR elements | 1 | 76 | 0.04 | 4 | 1259 | 1.20 | 0 | 0 | 0 | 2 | 645 | 0.33 |
DNA transposons | 4 | 203 | 0.12 | 0 | 0 | 0 | 5 | 137 | 0.07 | 8 | 1014 | 0.52 |
Unclassified | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 330 | 0.17 |
Total interspersed repeats | 17077 | 9.97 | 5191 | 2.68 | 3805 | 2.02 | 5191 | 2.68 | ||||
9 TGMCBA-217A3 | 13 TGMCBA-136I12 | 17 TGMCBA-375I5 | 17 TGMCBA-67H23 | |||||||||
%GC | 48.72 | 51.96 | 44.44 | 51.09 | ||||||||
Satellites | 1 | 260 | 0.12 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1074 | 0.64 |
Simple repeats | 65 | 3487 | 1.63 | 87 | 6437 | 3.8 | 41 | 1769 | 1.24 | 45 | 2772 | 1.66 |
Retroelement | 24 | 5688 | 2.66 | 51 | 11247 | 6.64 | 62 | 19590 | 13.73 | 44 | 11042 | 6.6 |
1) SINEs | 0 | 0 | 0 | 1 | 90 | 0.05 | 2 | 183 | 0.13 | 0 | 0 | 0 |
2) LINEs | 13 | 2373 | 1.11 | 34 | 5458 | 3.22 | 42 | 11979 | 8.4 | 32 | 6943 | 4.15 |
3) LTR elements | 11 | 3315 | 1.55 | 16 | 5699 | 3.37 | 18 | 7428 | 5.21 | 12 | 4099 | 2.45 |
DNA transposons | 8 | 815 | 0.24 | 16 | 911 | 0.54 | 6 | 446 | 0.31 | 7 | 709 | 0.42 |
Unclassified | 0 | 0 | 0 | 3 | 316 | 0.19 | 1 | 97 | 0.07 | 0 | 0 | 0 |
Total interspersed repeats | 6206 | 2.9 | 12474 | 7.37 | 20133 | 14.11 | 11751 | 7.03 | ||||
23 TGMCBA-227A15 | 27 TGMCBA-23C5 | Z CH261-129A16 | Z TGMCBA-200J22 | |||||||||
%GC | 49.38 | 48.70 | 41.03 | 34.62 | ||||||||
Satellites | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 98 | 0.04 | 0 | 0 | 0 |
Simple repeats | 18 | 909 | 1.59 | 40 | 2247 | 1.11 | 68 | 2973 | 1.32 | 47 | 2450 | 1.45 |
Retroelement | 28 | 7991 | 14 | 161 | 47194 | 23.26 | 53 | 26179 | 11.59 | 46 | 16566 | 9.84 |
1) SINEs | 0 | 0 | 0 | 2 | 139 | 0.07 | 1 | 95 | 0.04 | 1 | 137 | 0.08 |
2) LINEs | 15 | 3180 | 5.57 | 117 | 25323 | 12.48 | 50 | 25215 | 11.16 | 32 | 11149 | 6.62 |
3) LTR elements | 13 | 4811 | 8.43 | 42 | 21732 | 10.71 | 2 | 869 | 0.38 | 13 | 5280 | 3.14 |
DNA transposons | 1 | 85 | 0.15 | 6 | 979 | 0.48 | 12 | 2842 | 1.26 | 11 | 714 | 0.42 |
Unclassified | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Total interspersed repeats | 8076 | 14.15 | 48173 | 23.74 | 29021 | 12.85 | 17280 | 10.26 |