Chicken chromosome | BAC | Size (bp) | Number of repeats | Top five repeat motifs | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
type | bp | % | type | bp | % | type | bp | % | type | bp | % | type | bp | % | ||||
1 | CH261-89C18 | 171,359 | 18 | (CCATT)11 | 55 | 0.0321 | (AGGGT)9 | 45 | 0.0263 | (AAAC)7 | 28 | 0.0163 | (ATC)9 | 27 | 0.0158 | (AAC)8 | 24 | 0.0140 |
1 | TGMCBA-167P13 | 105,288 | 11 | (ATCC)34 | 136 | 0.1292 | (ATC)16 | 48 | 0.0456 | (AGC)12 | 36 | 0.0342 | (CCT)9 | 27 | 0.0256 | - | - | - |
4 | CH261-71L6 | 187,959 | 25 | (CCTTT)70 | 350 | 0.1862 | (CCTCT)30 | 150 | 0.0798 | (GCT)12 | 36 | 0.0192 | (GTT)12 | 36 | 0.0192 | (AG)17 | 34 | 0.0181 |
9 | CH261-95N3 | 193,574 | 31 | (CCTCT)24 | 120 | 0.0620 | (AT)42 | 84 | 0.0434 | (AC)30 | 60 | 0.0310 | (ATT)18 | 54 | 0.0279 | (AAAT)10 | 40 | 0.0207 |
9 | TGMCBA-217A3 | 214,179 | 41 | (AGC)32 | 96 | 0.0448 | (ACGGC)17 | 85 | 0.0397 | (AGCCC)14 | 70 | 0.0327 | (AT)35 | 70 | 0.0327 | (GCT)22 | 66 | 0.0308 |
13 | TGMCBA-136I12 | 169,361 | 56 | (GGAT)36 | 144 | 0.0850 | (GCT)30 | 90 | 0.0531 | (AGC)26 | 78 | 0.0461 | (AT)31 | 62 | 0.0366 | (GGGCT)12 | 60 | 0.0354 |
17 | TGMCBA-375I5 | 142,672 | 22 | (GGAT)54 | 216 | 0.1514 | (CCTCT)18 | 90 | 0.0631 | (ATCC)20 | 80 | 0.0561 | (ATT)13 | 39 | 0.0273 | (GT)13 | 26 | 0.0182 |
17 | TGMCBA-67H23 | 167,209 | 24 | (AT)54 | 108 | 0.0646 | (ATTTT)17 | 85 | 0.0508 | (ATCCCC)12 | 72 | 0.0431 | (GGAT)10 | 40 | 0.0239 | (AGG)10 | 30 | 0.0179 |
23 | TGMCBA-227A15 | 57,070 | 11 | (AT)16 | 32 | 0.0561 | (ATATTT)5 | 30 | 0.0526 | (ATGT)7 | 28 | 0.0491 | (ATTT)6 | 24 | 0.0421 | (CCT)8 | 24 | 0.0421 |
27 | TGMCBA-23C5 | 202,884 | 33 | (GGAT)43 | 172 | 0.0848 | (AAACCT)11 | 66 | 0.0325 | (CCCTT)9 | 45 | 0.0222 | (ATCC)10 | 40 | 0.0197 | (AGC)12 | 36 | 0.0177 |
Z | CH261-129A16 | 225,875 | 34 | (CCTCT)70 | 350 | 0.1550 | (CTCTT)31 | 155 | 0.0686 | (AT)47 | 94 | 0.0416 | (CTTTTT)12 | 72 | 0.0319 | (AAGG)13 | 52 | 0.0230 |
Z | TGMCBA-200J22 | 168,414 | 26 | (CTTTTT)24 | 144 | 0.0855 | (AAG)34 | 102 | 0.0606 | (AAGGG)17 | 85 | 0.0505 | (AT)38 | 76 | 0.0451 | (AAGAGG)12 | 72 | 0.0428 |