Table 1 Top ten most upregulated and downregulated siRNA DC-clusters in galls compared to uninfected roots at 7 dpi
DC-clusters | Downstream genes | |||||
|---|---|---|---|---|---|---|
Cluster name | variation G/R 7dpi | gene name | Gene description (TAIR) | Log2 G/R | ||
7 dpi | 14 dpi | 21 dpi | ||||
chr4:5373687–5,374,187 | up | At4g08455 | BTB/POZ domain-containing protein | −0.9 | No | − 0.9 |
chr1:17450567–17,451,109 | up | At1g47530 | MATE efflux family protein | −0.8 | No | −1.0 |
chr3:10387344–10,387,729 | up | At3g27970 | Exonuclease family protein | −1.1 | No | −0.9 |
chr2:11040438–11,040,725 | up | At2g25900 | A. thaliana TANDEM ZINC FINGER PROTEIN 1 (ATCTH) | −0.8 | −0.8 | −1.4 |
chr3:9814548–9,815,346 | up | At3g26720 | glycosyl hydrolase family 38 protein | −1.0 | No | No |
chr3:22340217–22,340,552 | up | At3g60450 | Phosphoglycerate mutase family protein | −1.2 | −1.4 | − 1.5 |
chr3:15356722–15,357,007 | up | At3g43430 | RING/U-box superfamily protein (zinc finger) | −0.7 | −0.9 | No |
chr1:25745346–25,745,737 | up | At1g68570 | membrane localized GA transporter (ATNPF3.1) | −1.2 | −1.5 | −1.3 |
chr1:24996663–24,997,231 | up | At1g66970 | GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE (GDPD) LIKE 1 | −0.9 | −1.5 | −0.9 |
chr2:1681688–1,682,004 | up | At2g04795 | unknown protein | −1.2 | No | No |
chr3:10284167–10,284,467 | down | At3g27740 | carbamoyl phosphate synthetase (CPS) small subunit (carA) | 0.7 | No | No |
chr1:26139675–26,140,148 | down | At1g69530 | Expansin A1 | 1.3 | 2.9 | 3.0 |
chr1:10506341–10,507,511 | down | At1g29980 | choice-of-anchor C domain protein | 1.1 | 1.9 | 1.4 |
chr4:2442915–2,443,871 | down | At4g04830 | methionine sulfoxide reductase B5 | 1.9 | No | No |
chr3:22214692–22,214,777 | down | At3g60140 | protein similar to beta-glucosidase | 0.7 | −2.1 | −1.2 |
chr2:1281392–1,281,621 | down | At2g04030 | chloroplast-targeted 90-kDa heat shock protein (CR88) | 1.0 | 0.9 | No |
chr1:3322776–3,323,550 | down | At1g10140 | unknown protein | 0.9 | No | 0.7 |
chr5:19447678–19,447,954 | down | At5g48000 | Member of the CYP708A family of cytochrome P450 enzymes (CYP708A2) | 0.8 | No | No |
chr2:14572190–14,572,294 | down | At2g34590 | transketolase family protein | 0.8 | 1.1 | 0.7 |