Table 4 siRNA DC-clusters differentially expressed in galls at 14dpi with sequence identity to Arabidopsis transposable elements
DC-clusters | Downstream genes | TE | |||||
|---|---|---|---|---|---|---|---|
Cluster name | variation | Gene name | Gene description (TAIR) | Log2 G/R | Similarity | TE name | |
G/R 14 dpi | 7 dpi | 14 dpi | |||||
chr1:17018600–17,021,142 | up | At1g45015 | MD-2-related lipid recognition domain-containing protein | No | −1.6 | 0.7642 | TNAT2A |
chr2:14492683–14,493,021 | up | At2g34350 | Nodulin-like / Major Facilitator Superfamily | No | −0.7 | 0.8050 | ATTIRX1A |
chr2:18083599–18,083,939 | up | At2g43590 | Chitinase family | No | −1.1 | 0.7284 | ATTIRX1B |
chr2:5923051–5,923,711 | up | At2g14080 | Disease resistance protein (TIR-NBS-LRR class) | No | −0.7 | 0.8189 | ATLINE1A |
chr2:5924097–5,924,304 | up | 0.6909 | ATCOPIA95 I | ||||
chr3:10719116–10,720,702 | up | At3g28600 | P-loop containing nucleoside triphosphate hydrolases | No | −1.0 | 0.7458 | Sadhu7–2 |
chr3:11195491–11,195,822 | up | At3g29250 | NAD(P)-binding Rossmann-fold superfamily protein | No | −0.9 | 0.7312 | ATHILA4D LTR |
chr3:22215861–22,216,213 | up | At3g60140 | Protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1 (DIN2, SRG2) | 0.7 | −2.1 | 0.9794 | ATREP13 |
chr4:6489725–6,490,158 | up | At4g10500 | Oxidoreductase, 2OG-Fe(II) oxygenase family protein | −0.8 | 2.3 | 0.7176 | ATHATN3 |
0.7826 | ATHAT8 | ||||||
chr4:6490209–6,490,725 | up | 0.7794 | ATHATN4 | ||||
0.8434 | ATHATN4 | ||||||
chr5:20165643–20,165,928 | up | At5g49660 | Xylem intermixed with phloem 1 | No | −1.2 | 0.7474 | ATHATN3 |
chr5:3750834–3,753,121 | up | At5g11670 | Malic enzyme (NADP-ME2) | −1.4 | −1.0 | 0.8554 | ATHATN4 |
chr5:5716875–5,717,705 | up | At5g17340 | Putative membrane lipoprotein | No | −2.1 | 0.7153 | AtSB4 |