Table 2 Novel milRNAs identified in T. rubrum
From: Integrated microRNA and mRNA analysis in the pathogenic filamentous fungus Trichophyton rubrum
MilRNA | Sequence(5′-3′) | Length (nt) | Length of precursors (nt) | MFE (kcal mol−1) | Total reads | |
|---|---|---|---|---|---|---|
Conidia | Mycelia | |||||
Tru-novel-miRNA-1 | UACCAGACCAACUCCACACCCCU | 23 | 171 | −58.1 | 50 | 2 |
Tru-novel-miRNA-1* | AGGGUUUGGUUUGGUUUGGUAU | 22 | Â | Â | 6 | 0 |
Tru-novel-miRNA-2 | ACAUGUGUCUGUAGUGUUUU | 20 | 280 | −74.9 | 13 | 22 |
Tru-novel-miRNA-2* | UACGCCGCAGCAUUGAUAGAUG | 22 | Â | Â | 1 | 0 |
Tru-novel-miRNA-3 | UGAUCGGGAUUCCUCACGGUAU | 22 | 208 | −70.3 | 2 | 0 |
Tru-novel-miRNA-3* | UUCGUAGAGGCAUCCUGGUC | 20 | Â | Â | 1 | 0 |
Tru-novel-miRNA-4 | UAGGCCUCCUGGCUCUCGAU | 20 | 312 | −140 | 4 | 0 |
Tru-novel-miRNA-4* | CCAGACGGCCGGGCGGUAGAAG | 22 | Â | Â | 1 | 0 |
Tru-novel-miRNA-5 | CGACUGUGGCCAUGGAAGU | 19 | 83 | −32.2 | 465 | 209 |
Tru-novel-miRNA-6 | UGCUUGAGAGUCACCGGAGAC | 21 | 280 | − 109.82 | 24 | 0 |
Tru-novel-miRNA-7 | GAGCGCUUUCUUGAUCUUG | 19 | 261 | −100 | 0 | 17 |
Tru-novel-miRNA-8 | AUCGGAGCGAUGCGAGACAUAGC | 23 | 299 | − 119.9 | 3 | 0 |
Tru-novel-miRNA-8* | UCGAUGUUUCUCUGGGAUAC | 20 | Â | Â | 1 | 0 |
Tru-novel-miRNA-9 | UGCUCCUGCUCCUGCUCGGU | 20 | 234 | − 94.2 | 2282 | 217 |
Tru-novel-miRNA-10 | UGAGCCAAAAGAGCGAGCCCACA | 23 | 134 | −50.55 | 7032 | 1492 |
Tru-novel-miRNA-10* | UGGGCUGGUCGCUUUGGUUGA | 21 | Â | Â | 5 | 0 |
Tru-novel-miRNA-11 | UGGCUUGAAAUUCGGGAACCAGC | 23 | 216 | −73.9 | 96 | 31 |
Tru-novel-miRNA-12 | UGGUGAUUGGGCUGGAUAGAC | 21 | 282 | −98.2 | 3 | 0 |